Factsheet for PGSC0003DMT400093802

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2
peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	mitochondrion
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41670.1	PGSC0003DMT400002331	AT1G35670.1	19130088
AT5G41670.1	PGSC0003DMT400067082	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g056120.1.1	Tomato	plastid	97.78	97.58
AT5G41670.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.24	85.63
Bra027685.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.24	85.63
CDY25568	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.04	85.42
CDY44457	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	84.04	85.42
AT1G64190.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.04	85.42
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	83.84	85.22
Bra025480.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	83.64	85.01
CDY34406	Canola	extracellular	20.0	83.9
VIT_02s0025g00900.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	83.23	83.4
KRH41276	Soybean	nucleus	82.83	82.83
KRH60004	Soybean	cytosol	79.8	82.46
CDY34405	Canola	cytosol	23.03	80.28
GSMUA_Achr2P06120_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.63	78.48
GSMUA_Achr3P16150_001	Banana	mitochondrion	73.54	77.45
PGSC0003DMT400064670	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	72.93	74.43
PGSC0003DMT400004861	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	72.32	73.81
TraesCS1D01G361400.1	Wheat	cytosol, mitochondrion, plastid	71.11	73.64
Os11t0484500-01	Rice	plastid	74.34	72.44
TraesCS1A01G357200.1	Wheat	unclear	73.13	72.26
TraesCS1B01G373600.1	Wheat	plastid	73.13	72.26
EES08484	Sorghum	plastid	73.54	72.22
Zm00001d049187_P001	Maize	plastid	73.94	72.19
HORVU1Hr1G080480.1	Barley	plastid	73.54	62.22

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	EntrezGene:102603339	Gene3D:3.40.50.720
MapMan:3.9.1.3	InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004616	GO:GO:0005488	GO:GO:0005975
GO:GO:0006098	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409
GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0016491	GO:GO:0019521	GO:GO:0050661	GO:GO:0055114	InterPro:IPR013328	UniProt:M1DSQ9
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00393	PFAM:PF03446	EnsemblPlantsGene:PGSC0003DMG400043373	PGSC:PGSC0003DMG400043373	EnsemblPlants:PGSC0003DMT400093802
PIRSF:PIRSF000109	PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH	SMART:SM01350
SUPFAM:SSF48179	SUPFAM:SSF51735	TIGRFAMs:TIGR00873	UniParc:UPI00029571DB	RefSeq:XP_006360699.1	:

Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:PGSC_GENE;Acc:PGSC0003DMG400043373]

Coordinates

chr12:+:53792390..53793877

Molecular Weight (calculated)

54355.7 Da

IEP (calculated)

5.317

GRAVY (calculated)

-0.339

Length

495 amino acids

Sequence
(BLAST)

001: MEGAATAQAL SRIGLAGLAV MGQNLALNIA EKGFPISVYN RTTSKVDETL DRAQNEGQLP LIGQYNPRDF VLSIQRPRSV IILVKAGSPV DQTIAALSEY
101: MEPGDTIIDG GNEWYENTER RIDEASSKGL LYLGMGVSGG EEGARNGPSL MPGGSYGAYT NIRDILEKVA AQVEDGPCVT YIGEGGSGNF VKMVHNGIEY
201: GDMQLISEAY DVLKNAGGLS NSELADIFAE WNRGELESFL VEITADIFNV KDELTGNGEL VDKILDKTGM KGTGKWTVQQ AAELSIAAPT IAASLDSRYM
301: SGLKDEREEA SEIFRKEGLK EEISSDINGS SLDKKRLIDD VRQALYASKI CSYAQGMNLL RAKSSEKGWN LNLGEMARIW KGGCIIRAVF LDRIKKAYQR
401: NPNLANLMVD PEFAREMVQR QAAWRRVVGL AVQKGISVPG MSASLQYFDT YRRSRLPANL VQAQRDYFGA HTYERVDKSG AYHTEWAKLA RKARV

Best Arabidopsis Sequence Match ( AT5G41670.2 )
(BLAST)

001: MESVALSRIG LAGLAVMGQN LALNIADKGF PISVYNRTTS KVDETLDRAS NEGKLPVAGQ YSPRDFVLSI QRPRSVIILV KAGAPVDQTI SALSEYMEPG
101: DCIIDGGNEW YQNTERRIVE AEKKGLLYLG MGVSGGEEGA RNGPSLMPGG SFTAYNNVKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNDEL AEIFTEWNRG ELESFLVEIT SDIFRVKDDY GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLE EAGLKEDIGS ASRGVDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSLEK GWDLNLGEMA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL
401: VVDPDFAKEM VQRQAAWRRV VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKSQ

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178UQL8]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.