Factsheet for TraesCS1B01G041100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54160.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT5G54160.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT5G54160.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G032000.1	Wheat	cytosol	91.28	91.28
TraesCS1B01G040400.1	Wheat	cytosol	57.77	89.83
HORVU1Hr1G089700.1	Barley	cytosol, vacuole	80.11	80.33
TraesCS3B01G448600.1	Wheat	cytosol	62.4	61.89
Os04t0176200-00	Rice	cytosol	38.96	60.85
Os04t0104900-01	Rice	cytosol	56.68	58.76
Os04t0175600-01	Rice	plasma membrane	58.86	57.14
Os04t0175900-01	Rice	cytosol, plasma membrane	56.13	55.53
TraesCS2B01G065800.1	Wheat	cytosol	13.9	45.54
GSMUA_Achr2P04480_001	Banana	cytosol	28.34	45.41
TraesCS2B01G617300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.14	43.02
TraesCS3B01G612000.1	Wheat	cytosol	40.6	41.85
TraesCS7B01G245500.1	Wheat	cytosol	40.87	41.67
CDY18304	Canola	cytosol	23.16	41.26
CDY18302	Canola	cytosol	23.16	41.26
TraesCS6B01G011100.1	Wheat	cytosol	40.33	41.11
TraesCS2B01G066100.1	Wheat	cytosol	39.78	40.9
TraesCS5B01G036200.1	Wheat	vacuole	38.96	40.74
GSMUA_Achr2P04370_001	Banana	cytosol	40.05	40.61
GSMUA_AchrUn_...	Banana	cytosol, vacuole	39.51	40.17
GSMUA_AchrUn_...	Banana	cytosol	32.97	40.07
GSMUA_AchrUn_...	Banana	cytosol	39.24	39.89
TraesCS5B01G036100.1	Wheat	endoplasmic reticulum, vacuole	38.15	39.89
KRH14071	Soybean	cytosol	22.34	39.81
GSMUA_Achr9P28010_001	Banana	cytosol, plasma membrane, vacuole	38.69	39.78
Solyc03g080180.2.1	Tomato	extracellular	37.33	38.38
GSMUA_AchrUn_...	Banana	cytosol	28.88	38.27
PGSC0003DMT400001512	Potato	cytosol	36.78	37.19
KRH64288	Soybean	cytosol, nucleus	36.78	36.99
CDY29856	Canola	cytosol	36.24	36.24
Bra019031.1-P	Field mustard	cytosol	36.24	36.24
KRH53640	Soybean	cytosol	35.97	36.16
AT5G54160.1	Thale cress	cytosol	35.69	36.09
CDY19037	Canola	cytosol	36.24	36.04
KRH64289	Soybean	cytosol	32.7	36.04
KRH53638	Soybean	mitochondrion	35.69	35.89
KRH53639	Soybean	cytosol	35.69	35.79
GSMUA_Achr2P04400_001	Banana	cytosol, golgi, mitochondrion	40.87	35.71
CDY14330	Canola	cytosol	35.15	35.64
CDY19039	Canola	cytosol	34.06	35.51
Bra003007.1-P	Field mustard	cytosol	34.88	35.16
CDY18306	Canola	cytosol	34.88	35.16
CDY14328	Canola	cytosol	34.88	35.16
CDX92835	Canola	cytosol	35.15	35.15
Bra003009.1-P	Field mustard	cytosol	33.24	34.86
CDY55338	Canola	cytosol	28.07	34.8
Bra026320.1-P	Field mustard	cytosol	28.07	34.8
CDY43839	Canola	cytosol	34.33	34.62
CDY43052	Canola	cytosol	34.33	34.62
Bra029041.1-P	Field mustard	cytosol	34.33	34.62
TraesCS6B01G449400.1	Wheat	cytosol	34.06	33.78
CDY28789	Canola	cytosol	30.52	31.02
Bra022700.1-P	Field mustard	cytosol	30.52	31.02
CDY41780	Canola	cytosol	19.62	28.12
VIT_16s0098g00850.t01	Wine grape	cytosol	38.42	19.05

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.50.150	MapMan:50.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008171	GO:GO:0016740
GO:GO:0046983	InterPro:IPR016461	InterPro:IPR036388	InterPro:O-MeTrfase_COMT	InterPro:O_MeTrfase_2	PFAM:PF00891
PFAM:PF08100	PIRSF:PIRSF005739	PFscan:PS51683	PANTHER:PTHR11746	PANTHER:PTHR11746:SF120	InterPro:Plant_MeTrfase_dimerisation
InterPro:SAM-dependent_MTases	SUPFAM:SSF46785	SUPFAM:SSF53335	EnsemblPlantsGene:TraesCS1B01G041100	EnsemblPlants:TraesCS1B01G041100.1	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:20570664..20574996

Molecular Weight (calculated)

39777.8 Da

IEP (calculated)

5.580

GRAVY (calculated)

0.020

Length

367 amino acids

Sequence
(BLAST)

001: MDNNIVSGSR INPAGGEDDE ETWLHAWGLI TSFAVSMTLK AAIELGIFEA LSNAGSGAIT ADELAARLPT MDKGGGAASV DRVMRLLASF DVVKCVTEAG
101: PSGEAIRQYR PSPVCRWLSS NHGGPSLAPY AMFTMDQDFL TAWQQLGAAA GGEQTAFKRT HGVSMGEHLG RNPRVLGVVD KAMVQISVMV TSKLLERFHG
201: FDDVTVLVDV GGGTGSTLEM ITSRYKHIRG INFDLPHVIS LAPSILGVEH IAGNMFDNVP TGDTIFLKTV LHMLDDNDCI KVLKNCHQAM SDKGRLIAVE
301: FVLPATPEVT RAAQNLYILD VMMLNNSEGG KERTVQEFLK LARESGFSST FQSTYIFGNF WALEFTK

Best Arabidopsis Sequence Match ( AT1G21110.1 )
(BLAST)

001: MGYLFEETLS SNPKTPIVVD DDNELGLMAV RLANAAAFPM VLKASLELGV FDTLYAEASR TDSFLSPSEI ASKLPTTPRN PGAPVLLDRM LRLLASYSMV
101: KCEKVSVGKE QRVYRAEPIC RFFLKNNIQD IGSLASQVIV NFDSVFLNTW AQLKDVVLEG GDAFGRAHGG MKLFDYMGTD ERFSKLFNQT GFTIAVVKKA
201: LEVYQGFKGV NVLVDVGGGV GNTLGVVTSK YPNIKGINFD LTCALAQAPT YPGVEHVAGD MFVDVPTGNA MILKRILHDW TDEDCVKILK NCWKSLPQNG
301: KVVVIELVTP DEAENGDINA NIAFDMDMLM FTQCSGGKER SRAEFEALAA ASGFSHCQFV CQAYHCWIIE FCK

Arabidopsis Description

IGMT3Indole glucosinolate O-methyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.