Factsheet for TraesCS1A01G032000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54160.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT5G54160.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT5G54160.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G033700.1	Wheat	cytosol	93.19	93.19
TraesCS1B01G041100.1	Wheat	cytosol	91.28	91.28
TraesCS1B01G040400.1	Wheat	cytosol	56.95	88.56
HORVU1Hr1G089700.1	Barley	cytosol, vacuole	80.11	80.33
Os04t0176200-00	Rice	cytosol	40.05	62.55
Os04t0104900-01	Rice	cytosol	58.04	60.17
Os04t0175600-01	Rice	plasma membrane	59.95	58.2
Os04t0175900-01	Rice	cytosol, plasma membrane	56.95	56.33
GSMUA_Achr2P04480_001	Banana	cytosol	28.61	45.85
TraesCS4A01G344100.1	Wheat	cytosol	28.07	44.02
TraesCS3A01G534900.1	Wheat	cytosol	40.6	41.85
GSMUA_AchrUn_...	Banana	cytosol	34.33	41.72
TraesCS6A01G005600.1	Wheat	cytosol	39.78	41.36
TraesCS2A01G051600.2	Wheat	cytosol	40.05	41.18
TraesCS1A01G407500.1	Wheat	cytosol	35.69	40.81
CDY18302	Canola	cytosol	22.89	40.78
CDY18304	Canola	cytosol	22.89	40.78
TraesCS7A01G333900.1	Wheat	cytosol	39.78	40.56
GSMUA_AchrUn_...	Banana	cytosol	39.78	40.44
GSMUA_Achr2P04370_001	Banana	cytosol	39.78	40.33
KRH14071	Soybean	cytosol	22.62	40.29
GSMUA_AchrUn_...	Banana	cytosol, vacuole	39.51	40.17
GSMUA_Achr9P28010_001	Banana	cytosol, plasma membrane, vacuole	38.69	39.78
GSMUA_AchrUn_...	Banana	cytosol	29.43	38.99
Solyc03g080180.2.1	Tomato	extracellular	37.06	38.1
KRH64288	Soybean	cytosol, nucleus	37.06	37.26
PGSC0003DMT400001512	Potato	cytosol	36.78	37.19
KRH64289	Soybean	cytosol	33.24	36.64
CDY19037	Canola	cytosol	36.78	36.59
KRH53640	Soybean	cytosol	36.24	36.44
Bra019031.1-P	Field mustard	cytosol	36.24	36.24
KRH53638	Soybean	mitochondrion	35.97	36.16
KRH53639	Soybean	cytosol	35.97	36.07
CDY29856	Canola	cytosol	35.97	35.97
TraesCS6A01G405200.1	Wheat	cytosol	35.42	35.81
CDY55338	Canola	cytosol	28.88	35.81
Bra026320.1-P	Field mustard	cytosol	28.88	35.81
GSMUA_Achr2P04400_001	Banana	cytosol, golgi, mitochondrion	40.87	35.71
AT5G54160.1	Thale cress	cytosol	35.15	35.54
CDY19039	Canola	cytosol	34.06	35.51
CDY14330	Canola	cytosol	34.88	35.36
CDX92835	Canola	cytosol	35.15	35.15
CDY18306	Canola	cytosol	34.6	34.89
Bra003007.1-P	Field mustard	cytosol	34.33	34.62
CDY14328	Canola	cytosol	34.33	34.62
Bra003009.1-P	Field mustard	cytosol	32.97	34.57
CDY43839	Canola	cytosol	34.06	34.34
CDY43052	Canola	cytosol	33.79	34.07
Bra029041.1-P	Field mustard	cytosol	33.79	34.07
CDY28789	Canola	cytosol	30.52	31.02
Bra022700.1-P	Field mustard	cytosol	30.52	31.02
CDY41780	Canola	cytosol	19.35	27.73
VIT_16s0098g00850.t01	Wine grape	cytosol	38.15	18.92

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.50.150	MapMan:50.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008171	GO:GO:0016740
GO:GO:0046983	InterPro:IPR016461	InterPro:IPR036388	InterPro:O-MeTrfase_COMT	InterPro:O_MeTrfase_2	PFAM:PF00891
PFAM:PF08100	PIRSF:PIRSF005739	PFscan:PS51683	PANTHER:PTHR11746	PANTHER:PTHR11746:SF120	InterPro:Plant_MeTrfase_dimerisation
InterPro:SAM-dependent_MTases	SUPFAM:SSF46785	SUPFAM:SSF53335	EnsemblPlantsGene:TraesCS1A01G032000	EnsemblPlants:TraesCS1A01G032000.1	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	TIGR:cd02440	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1A:-:14744251..14748581

Molecular Weight (calculated)

39570.7 Da

IEP (calculated)

6.239

GRAVY (calculated)

0.081

Length

367 amino acids

Sequence
(BLAST)

001: MDNNTVGGSR INPAAGDDDE GTWLHAWGLI TSFAVSMTLK AAIELGIFDA LSNAGSLAIT ADELAARLPA VDKAGGSAPV DRIMRLLASF DVVKCVTGAG
101: PSGEAIRQYK PSPVCRWLSS NHGGPSLASY AMFTTDQDFL MAWQQLGAAV GGGQTAFKRT HGVPMGEHLG RNPRVLGVVD KAMVQISVMV TSKLLERFHG
201: FDDVAVLVDV GGGTGSTLEM ITSRYKHIRG INFDLPHVIS LSPSILGVEH IAGNMFDNVP TGDVIFLKTV LHMFDDNDCI KILKNCRQAL SDKGRLIAVE
301: FVLPATPELT RAAQNLYILD VMMLNNSEGG KERTAQEFLK LVRESGFSGT FQSTYIFGNF WALEFTK

Best Arabidopsis Sequence Match ( AT1G21100.1 )
(BLAST)

001: MGYLFQETLS SNPKTPIVVD DDNELGLMAV RLANAAAFPM VLKAALELGV FDTLYAAASR TDSFLSPYEI ASKLPTTPRN PEAPVLLDRM LRLLASYSMV
101: KCGKALSGKG ERVYRAEPIC RFFLKDNIQD IGSLASQVIV NFDSVFLNTW AQLKDVVLEG GDAFGRAHGG MKLFDYMGTD ERFSKLFNQT GFTIAVVKKA
201: LEVYEGFKGV KVLVDVGGGV GNTLGVVTSK YPNIKGINFD LTCALAQAPS YPGVEHVAGD MFVDVPTGDA MILKRILHDW TDEDCVKILK NCWKSLPENG
301: KVVVIELVTP DEAENGDINA NIAFDMDMLM FTQCSGGKER SRAEFEALAA ASGFTHCKFV CQAYHCWIIE FCK

Arabidopsis Description

IGMT1Indole glucosinolate O-methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.