Factsheet for Os04t0175900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 4
vacuole 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54160.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0176200-00	Rice	cytosol	47.98	75.74
Os04t0175600-01	Rice	plasma membrane	72.51	71.16
Os04t0104900-01	Rice	cytosol	64.42	67.51
TraesCS3B01G448600.1	Wheat	cytosol	63.61	63.78
Os12t0202700-00	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	36.66	61.54
HORVU1Hr1G089700.1	Barley	cytosol, vacuole	57.68	58.47
TraesCS1A01G032000.1	Wheat	cytosol	56.33	56.95
TraesCS1D01G033700.1	Wheat	cytosol	55.8	56.4
TraesCS1B01G041100.1	Wheat	cytosol	55.53	56.13
TraesCS1B01G040400.1	Wheat	cytosol	34.5	54.24
Os12t0240900-01	Rice	cytosol	53.91	53.33
CDY18302	Canola	cytosol	28.3	50.97
CDY18304	Canola	cytosol	28.3	50.97
Os12t0199500-00	Rice	cytosol	28.57	50.72
GSMUA_Achr2P04480_001	Banana	cytosol	30.73	49.78
Os08t0157500-01	Rice	cytosol, plasma membrane	45.82	46.2
GSMUA_Achr2P04370_001	Banana	cytosol	43.67	44.75
GSMUA_AchrUn_...	Banana	cytosol	36.39	44.7
KRH14071	Soybean	cytosol	24.8	44.66
GSMUA_AchrUn_...	Banana	cytosol	42.59	43.77
GSMUA_Achr9P28010_001	Banana	cytosol, plasma membrane, vacuole	42.05	43.7
GSMUA_AchrUn_...	Banana	cytosol, vacuole	42.32	43.49
CDY14330	Canola	cytosol	42.32	43.37
GSMUA_AchrUn_...	Banana	cytosol	32.08	42.96
Solyc03g080180.2.1	Tomato	extracellular	41.24	42.86
PGSC0003DMT400001512	Potato	cytosol	41.24	42.15
Bra003009.1-P	Field mustard	cytosol	39.62	42.0
KRH53640	Soybean	cytosol	41.24	41.92
CDY55338	Canola	cytosol	33.42	41.89
Bra026320.1-P	Field mustard	cytosol	33.42	41.89
KRH53638	Soybean	mitochondrion	40.97	41.64
KRH64288	Soybean	cytosol, nucleus	40.97	41.64
KRH53639	Soybean	cytosol	40.97	41.53
AT5G54160.1	Thale cress	cytosol	40.43	41.32
CDY43839	Canola	cytosol	40.16	40.93
CDY18306	Canola	cytosol	40.16	40.93
KRH64289	Soybean	cytosol	36.66	40.84
CDY43052	Canola	cytosol	39.89	40.66
Bra029041.1-P	Field mustard	cytosol	39.89	40.66
CDY19037	Canola	cytosol	40.16	40.38
Bra003007.1-P	Field mustard	cytosol	39.35	40.11
CDY14328	Canola	cytosol	39.35	40.11
Bra019031.1-P	Field mustard	cytosol	39.62	40.05
CDY29856	Canola	cytosol	39.35	39.78
GSMUA_Achr2P04400_001	Banana	cytosol, golgi, mitochondrion	44.47	39.29
CDY19039	Canola	cytosol	37.2	39.2
CDX92835	Canola	cytosol	38.54	38.96
CDY28789	Canola	cytosol	36.39	37.4
Bra022700.1-P	Field mustard	cytosol	36.39	37.4
Os02t0823400-01	Rice	cytosol	35.58	36.16
CDY41780	Canola	cytosol	23.72	34.38
VIT_16s0098g00850.t01	Wine grape	cytosol	43.67	21.89

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.50.150	MapMan:50.2.1	EMBL:AK061551	EMBL:AK104764	ProteinID:BAF14076.1
ProteinID:BAS87935.1	ProteinID:CAD39486.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008171	GO:GO:0008757	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019438	GO:GO:0032259	GO:GO:0046983	InterPro:IPR016461
InterPro:IPR036388	InterPro:O-MeTrfase_COMT	InterPro:O_MeTrfase_2	EnsemblPlantsGene:Os04g0175900	EnsemblPlants:Os04t0175900-01	PFAM:PF00891
PFAM:PF08100	PIRSF:PIRSF005739	PFscan:PS51683	PANTHER:PTHR11746	PANTHER:PTHR11746:SF120	InterPro:Plant_MeTrfase_dimerisation
UniProt:Q7XXD4	InterPro:SAM-dependent_MTases	SUPFAM:SSF46785	SUPFAM:SSF53335	UniParc:UPI000021C948	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 6Winged helix repressor DNA-binding domain containing protein. (Os04t0175900-01)

Coordinates

chr4:+:5178491..5186485

Molecular Weight (calculated)

40050.5 Da

IEP (calculated)

5.994

GRAVY (calculated)

0.044

Length

371 amino acids

Sequence
(BLAST)

001: MASGISRTPA TGVTAGGGDD EEAAWLHALE LISGFTVSMT LKAAIQLGLI DALTAAADGR ALTAGELVAQ LPAVDDAEAA TSVDRMLRLL ASFNVVRCST
101: EAGPGGDPLR RYSPAPVCRW FTAGDNHQGS LAPRLMLDVD EDNLSTWHQM AAAVVSGGPS AFERAHGMPL FEYMGTNHRF NMLFNQAMSQ QSMMVMNKLL
201: DRFHGFDGIS VLVDVGGGTG VTLKMIISRY KHITGVNFDL PHVISQAPSL PGVNHVAGNM FESVPKGDAI FLKSMLLRND EECIKILKNC HYALSDNGKV
301: IVVDIVLPET PKPVPEAQNP LRMDVMMLNN LRGGKIRTEQ EYAKLAMDSG FSGSFRTTYI FANFMAIELC K

Best Arabidopsis Sequence Match ( AT5G54160.1 )
(BLAST)

001: MGSTAETQLT PVQVTDDEAA LFAMQLASAS VLPMALKSAL ELDLLEIMAK NGSPMSPTEI ASKLPTKNPE APVMLDRILR LLTSYSVLTC SNRKLSGDGV
101: ERIYGLGPVC KYLTKNEDGV SIAALCLMNQ DKVLMESWYH LKDAILDGGI PFNKAYGMSA FEYHGTDPRF NKVFNNGMSN HSTITMKKIL ETYKGFEGLT
201: SLVDVGGGIG ATLKMIVSKY PNLKGINFDL PHVIEDAPSH PGIEHVGGDM FVSVPKGDAI FMKWICHDWS DEHCVKFLKN CYESLPEDGK VILAECILPE
301: TPDSSLSTKQ VVHVDCIMLA HNPGGKERTE KEFEALAKAS GFKGIKVVCD AFGVNLIELL KKL

Arabidopsis Description

OMT1Flavone 3'-O-methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK25]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.