Factsheet for TraesCS3B01G448600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54160.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT5G54160.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT5G54160.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0176200-00	Rice	cytosol	40.81	64.26
Os04t0175900-01	Rice	cytosol, plasma membrane	63.78	63.61
TraesCS1B01G040400.1	Wheat	cytosol	40.27	63.14
TraesCS1B01G041100.1	Wheat	cytosol	61.89	62.4
Os04t0104900-01	Rice	cytosol	59.19	61.86
Os04t0175600-01	Rice	plasma membrane	62.43	61.11
TraesCS2B01G065800.1	Wheat	cytosol	15.95	52.68
GSMUA_Achr2P04480_001	Banana	cytosol	31.89	51.53
TraesCS3B01G612000.1	Wheat	cytosol	44.59	46.35
GSMUA_AchrUn_...	Banana	cytosol	44.86	45.98
TraesCS2B01G066100.1	Wheat	cytosol	44.32	45.94
GSMUA_AchrUn_...	Banana	cytosol, vacuole	44.59	45.71
GSMUA_Achr9P28010_001	Banana	cytosol, plasma membrane, vacuole	44.05	45.66
CDY18302	Canola	cytosol	25.41	45.63
CDY18304	Canola	cytosol	25.41	45.63
TraesCS2B01G617300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.24	45.58
TraesCS7B01G245500.1	Wheat	cytosol	44.32	45.56
GSMUA_AchrUn_...	Banana	cytosol	37.03	45.36
TraesCS5B01G036200.1	Wheat	vacuole	42.7	45.01
TraesCS6B01G011100.1	Wheat	cytosol	43.78	45.0
GSMUA_Achr2P04370_001	Banana	cytosol	43.24	44.2
TraesCS5B01G036100.1	Wheat	endoplasmic reticulum, vacuole	41.62	43.87
Solyc03g080180.2.1	Tomato	extracellular	41.62	43.14
GSMUA_AchrUn_...	Banana	cytosol	32.16	42.96
PGSC0003DMT400001512	Potato	cytosol	41.08	41.87
KRH14071	Soybean	cytosol	22.97	41.26
KRH53639	Soybean	cytosol	40.81	41.26
KRH53638	Soybean	mitochondrion	40.54	41.1
KRH53640	Soybean	cytosol	40.27	40.82
KRH64288	Soybean	cytosol, nucleus	40.27	40.82
KRH64289	Soybean	cytosol	36.49	40.54
CDY14330	Canola	cytosol	38.65	39.5
Bra019031.1-P	Field mustard	cytosol	38.92	39.24
GSMUA_Achr2P04400_001	Banana	cytosol, golgi, mitochondrion	44.32	39.05
CDY29856	Canola	cytosol	38.65	38.96
Bra003009.1-P	Field mustard	cytosol	36.49	38.57
CDY19037	Canola	cytosol	38.38	38.48
Bra003007.1-P	Field mustard	cytosol	37.84	38.46
CDY14328	Canola	cytosol	37.84	38.46
CDX92835	Canola	cytosol	38.11	38.42
AT5G54160.1	Thale cress	cytosol	37.57	38.29
CDY18306	Canola	cytosol	37.57	38.19
CDY43839	Canola	cytosol	37.3	37.91
CDY55338	Canola	cytosol	30.27	37.84
Bra026320.1-P	Field mustard	cytosol	30.27	37.84
CDY43052	Canola	cytosol	37.03	37.64
Bra029041.1-P	Field mustard	cytosol	37.03	37.64
CDY19039	Canola	cytosol	35.68	37.5
CDY28789	Canola	cytosol	33.78	34.63
Bra022700.1-P	Field mustard	cytosol	33.78	34.63
TraesCS6B01G449400.1	Wheat	cytosol	34.59	34.59
CDY41780	Canola	cytosol	21.35	30.86
VIT_16s0098g00850.t01	Wine grape	cytosol	41.89	20.95

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.50.150	MapMan:50.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008171	GO:GO:0016740
GO:GO:0046983	InterPro:IPR016461	InterPro:IPR036388	InterPro:O-MeTrfase_COMT	InterPro:O_MeTrfase_2	PFAM:PF00891
PFAM:PF08100	PIRSF:PIRSF005739	PFscan:PS51683	PANTHER:PTHR11746	PANTHER:PTHR11746:SF120	InterPro:Plant_MeTrfase_dimerisation
InterPro:SAM-dependent_MTases	SUPFAM:SSF46785	SUPFAM:SSF53335	EnsemblPlantsGene:TraesCS3B01G448600	EnsemblPlants:TraesCS3B01G448600.1	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:689162982..689167756

Molecular Weight (calculated)

40361.5 Da

IEP (calculated)

5.097

GRAVY (calculated)

0.013

Length

370 amino acids

Sequence
(BLAST)

001: MEKTNIVACR NPTSRDASDD EEATWSHAWG LISGFAVSIT LKTAIELGII DALTNAAGRA LTVDELAAQL PAPDKAGSAA SVDRLLRLLA AFDVVRCSTE
101: TGPDCEAVRK YTPAPVCRWL TSNRSDGSLA PLAMLAVDQD YLPTWNQMGA AVVCGVPTPF ERAHGVPLFE YMGKNPRLSG VFNQAMFHMS VTVISKMVER
201: FDGFDGVEVL VDVGGGTGAA LEMITARHKH IKGINFDLPY VITQAPSLPG VENIAGNMFE NVPTGDAIFL KWILHLQNDD ECIKILKNCH RALPANGKVI
301: VVEIVLPTTT EATREAQNMF LLDVIMFNNQ QGGKERTEQD FLKMARSSGF DGAFRSTYIF GNFWALEFTK

Best Arabidopsis Sequence Match ( AT1G21100.1 )
(BLAST)

001: MGYLFQETLS SNPKTPIVVD DDNELGLMAV RLANAAAFPM VLKAALELGV FDTLYAAASR TDSFLSPYEI ASKLPTTPRN PEAPVLLDRM LRLLASYSMV
101: KCGKALSGKG ERVYRAEPIC RFFLKDNIQD IGSLASQVIV NFDSVFLNTW AQLKDVVLEG GDAFGRAHGG MKLFDYMGTD ERFSKLFNQT GFTIAVVKKA
201: LEVYEGFKGV KVLVDVGGGV GNTLGVVTSK YPNIKGINFD LTCALAQAPS YPGVEHVAGD MFVDVPTGDA MILKRILHDW TDEDCVKILK NCWKSLPENG
301: KVVVIELVTP DEAENGDINA NIAFDMDMLM FTQCSGGKER SRAEFEALAA ASGFTHCKFV CQAYHCWIIE FCK

Arabidopsis Description

IGMT1Indole glucosinolate O-methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.