Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54160.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT5G54160.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT5G54160.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G341500.1 | Wheat | cytosol, golgi, unclear | 99.17 | 99.17 |
| TraesCS7A01G333900.1 | Wheat | cytosol | 98.61 | 98.61 |
| HORVU7Hr1G082280.1 | Barley | cytosol | 98.33 | 98.33 |
| TraesCS3B01G612000.1 | Wheat | cytosol | 92.78 | 93.82 |
| TraesCS6B01G011100.1 | Wheat | cytosol | 89.72 | 89.72 |
| Os08t0157500-01 | Rice | cytosol, plasma membrane | 83.33 | 81.52 |
| Zm00001d049541_P001 | Maize | cytosol, extracellular, mitochondrion | 81.11 | 80.22 |
| EES14578 | Sorghum | cytosol | 79.44 | 79.01 |
| TraesCS2B01G617300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 66.11 | 67.81 |
| TraesCS2B01G066100.1 | Wheat | cytosol | 65.83 | 66.39 |
| TraesCS2B01G065800.1 | Wheat | cytosol | 20.56 | 66.07 |
| Solyc03g080180.2.1 | Tomato | extracellular | 62.5 | 63.03 |
| CDY18302 | Canola | cytosol | 35.83 | 62.62 |
| CDY18304 | Canola | cytosol | 35.83 | 62.62 |
| AT5G54160.1 | Thale cress | cytosol | 62.22 | 61.71 |
| PGSC0003DMT400001512 | Potato | cytosol | 62.22 | 61.71 |
| TraesCS5B01G036200.1 | Wheat | vacuole | 59.72 | 61.25 |
| KRH64288 | Soybean | cytosol, nucleus | 61.94 | 61.1 |
| CDY43839 | Canola | cytosol | 61.67 | 60.99 |
| KRH53640 | Soybean | cytosol | 61.67 | 60.82 |
| CDY43052 | Canola | cytosol | 61.39 | 60.71 |
| Bra029041.1-P | Field mustard | cytosol | 61.39 | 60.71 |
| KRH53639 | Soybean | cytosol | 61.67 | 60.66 |
| KRH53638 | Soybean | mitochondrion | 61.39 | 60.55 |
| TraesCS5B01G036100.1 | Wheat | endoplasmic reticulum, vacuole | 58.89 | 60.4 |
| CDY18306 | Canola | cytosol | 60.56 | 59.89 |
| Bra003007.1-P | Field mustard | cytosol | 60.28 | 59.62 |
| CDY14328 | Canola | cytosol | 60.28 | 59.62 |
| KRH64289 | Soybean | cytosol | 53.89 | 58.26 |
| CDY14330 | Canola | cytosol | 58.33 | 58.01 |
| Bra003009.1-P | Field mustard | cytosol | 56.11 | 57.71 |
| CDY55338 | Canola | cytosol | 46.11 | 56.08 |
| Bra026320.1-P | Field mustard | cytosol | 46.11 | 56.08 |
| Bra019031.1-P | Field mustard | cytosol | 56.11 | 55.04 |
| CDY29856 | Canola | cytosol | 55.28 | 54.22 |
| CDX92835 | Canola | cytosol | 55.28 | 54.22 |
| CDY19037 | Canola | cytosol | 55.56 | 54.2 |
| CDY28789 | Canola | cytosol | 53.61 | 53.46 |
| Bra022700.1-P | Field mustard | cytosol | 53.61 | 53.46 |
| CDY19039 | Canola | cytosol | 51.67 | 52.84 |
| CDY41780 | Canola | cytosol | 35.28 | 49.61 |
| KRH14071 | Soybean | cytosol | 28.06 | 49.03 |
| TraesCS3B01G448600.1 | Wheat | cytosol | 45.56 | 44.32 |
| TraesCS1B01G041100.1 | Wheat | cytosol | 41.67 | 40.87 |
| TraesCS1B01G040400.1 | Wheat | cytosol | 26.11 | 39.83 |
| TraesCS6B01G449400.1 | Wheat | cytosol | 37.22 | 36.22 |
| VIT_16s0098g00850.t01 | Wine grape | cytosol | 63.89 | 31.08 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:21.6.1.7 | Gene3D:3.40.50.150 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008171 | GO:GO:0016740 |
| GO:GO:0046983 | InterPro:IPR016461 | InterPro:IPR036388 | InterPro:O-MeTrfase_COMT | InterPro:O_MeTrfase_2 | PFAM:PF00891 |
| PFAM:PF08100 | PIRSF:PIRSF005739 | PFscan:PS51683 | PANTHER:PTHR11746 | PANTHER:PTHR11746:SF120 | InterPro:Plant_MeTrfase_dimerisation |
| InterPro:SAM-dependent_MTases | SUPFAM:SSF46785 | SUPFAM:SSF53335 | EnsemblPlantsGene:TraesCS7B01G245500 | EnsemblPlants:TraesCS7B01G245500.1 | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:454181608..454183225
Molecular Weight (calculated)
38862.2 Da
IEP (calculated)
6.048
GRAVY (calculated)
0.083
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTAADMAA SADEEACMYA LQLVSSSILP MTLKNAIELG LLETLVAAGG KLLTPAEVAA KLPSTANPAA ADMVDRMLRL LASYNVVSCT MEEGKDGRLS
101: RRYRAAPVCK FLTPNEDGVS MAALALMNQD KVLMESWYYL KDAVLDGGIP FNKAYGMSAF EYHGTDPRFN RVFNEGMKNH SIIITKKLLE VYKGFEGLGT
201: IVDVGGGVGA TVGAITAAYP AIKGINFDLP HVISEAQPFP GVTHVGGDMF QKVPSGDAIL MKWILHDWSD EHCATLLKNC YDALPAHGKV VLVECILPVN
301: PEATPKAQGV FHVDMIMLAH NPGGRERYER EFEALAKGAG FKAIKTTYIY ANAFAIEFTK
101: RRYRAAPVCK FLTPNEDGVS MAALALMNQD KVLMESWYYL KDAVLDGGIP FNKAYGMSAF EYHGTDPRFN RVFNEGMKNH SIIITKKLLE VYKGFEGLGT
201: IVDVGGGVGA TVGAITAAYP AIKGINFDLP HVISEAQPFP GVTHVGGDMF QKVPSGDAIL MKWILHDWSD EHCATLLKNC YDALPAHGKV VLVECILPVN
301: PEATPKAQGV FHVDMIMLAH NPGGRERYER EFEALAKGAG FKAIKTTYIY ANAFAIEFTK
001: MGYLFQETLS SNPKTPIVVD DDNELGLMAV RLANAAAFPM VLKAALELGV FDTLYAAASR TDSFLSPYEI ASKLPTTPRN PEAPVLLDRM LRLLASYSMV
101: KCGKALSGKG ERVYRAEPIC RFFLKDNIQD IGSLASQVIV NFDSVFLNTW AQLKDVVLEG GDAFGRAHGG MKLFDYMGTD ERFSKLFNQT GFTIAVVKKA
201: LEVYEGFKGV KVLVDVGGGV GNTLGVVTSK YPNIKGINFD LTCALAQAPS YPGVEHVAGD MFVDVPTGDA MILKRILHDW TDEDCVKILK NCWKSLPENG
301: KVVVIELVTP DEAENGDINA NIAFDMDMLM FTQCSGGKER SRAEFEALAA ASGFTHCKFV CQAYHCWIIE FCK
101: KCGKALSGKG ERVYRAEPIC RFFLKDNIQD IGSLASQVIV NFDSVFLNTW AQLKDVVLEG GDAFGRAHGG MKLFDYMGTD ERFSKLFNQT GFTIAVVKKA
201: LEVYEGFKGV KVLVDVGGGV GNTLGVVTSK YPNIKGINFD LTCALAQAPS YPGVEHVAGD MFVDVPTGDA MILKRILHDW TDEDCVKILK NCWKSLPENG
301: KVVVIELVTP DEAENGDINA NIAFDMDMLM FTQCSGGKER SRAEFEALAA ASGFTHCKFV CQAYHCWIIE FCK
Arabidopsis Description
IGMT1Indole glucosinolate O-methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPU5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.