Factsheet for TraesCS7D01G341500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54160.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT5G54160.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT5G54160.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G333900.1	Wheat	cytosol	99.44	99.44
TraesCS7B01G245500.1	Wheat	cytosol	99.17	99.17
HORVU7Hr1G082280.1	Barley	cytosol	98.61	98.61
TraesCS3D01G540200.1	Wheat	cytosol	92.22	93.26
TraesCS6D01G008200.1	Wheat	cytosol	88.61	90.37
Os08t0157500-01	Rice	cytosol, plasma membrane	83.89	82.07
Zm00001d049541_P001	Maize	cytosol, extracellular, mitochondrion	81.11	80.22
EES14578	Sorghum	cytosol	79.44	79.01
TraesCS1D01G359500.1	Wheat	cytosol	50.56	77.78
TraesCS5D01G488900.1	Wheat	cytosol	68.89	70.25
TraesCS2D01G568300.1	Wheat	cytosol	68.61	69.97
TraesCS5D01G488800.2	Wheat	cytosol	69.44	69.06
TraesCS7D01G539100.1	Wheat	cytosol	67.22	68.75
TraesCS5D01G528600.1	Wheat	cytosol	68.33	68.14
TraesCS7D01G538900.1	Wheat	endoplasmic reticulum, vacuole	65.83	67.33
TraesCS2D01G052200.1	Wheat	cytosol	64.17	65.25
CDY18302	Canola	cytosol	36.39	63.59
CDY18304	Canola	cytosol	36.39	63.59
Solyc03g080180.2.1	Tomato	extracellular	63.06	63.59
AT5G54160.1	Thale cress	cytosol	63.06	62.53
PGSC0003DMT400001512	Potato	cytosol	62.78	62.26
KRH64288	Soybean	cytosol, nucleus	62.78	61.92
KRH53640	Soybean	cytosol	62.5	61.64
CDY43839	Canola	cytosol	62.22	61.54
KRH53638	Soybean	mitochondrion	62.22	61.37
Bra029041.1-P	Field mustard	cytosol	61.94	61.26
CDY43052	Canola	cytosol	61.94	61.26
KRH53639	Soybean	cytosol	62.22	61.2
CDY18306	Canola	cytosol	61.11	60.44
Bra003007.1-P	Field mustard	cytosol	60.83	60.16
CDY14328	Canola	cytosol	60.83	60.16
KRH64289	Soybean	cytosol	54.72	59.16
CDY14330	Canola	cytosol	59.17	58.84
Bra003009.1-P	Field mustard	cytosol	56.94	58.57
CDY55338	Canola	cytosol	46.94	57.09
Bra026320.1-P	Field mustard	cytosol	46.94	57.09
Bra019031.1-P	Field mustard	cytosol	56.67	55.59
CDY19037	Canola	cytosol	56.39	55.01
CDY29856	Canola	cytosol	55.83	54.77
CDX92835	Canola	cytosol	55.83	54.77
CDY28789	Canola	cytosol	53.61	53.46
Bra022700.1-P	Field mustard	cytosol	53.61	53.46
CDY19039	Canola	cytosol	52.22	53.41
CDY41780	Canola	cytosol	35.28	49.61
KRH14071	Soybean	cytosol	28.33	49.51
TraesCS1D01G033700.1	Wheat	cytosol	41.67	40.87
TraesCS6D01G388700.1	Wheat	cytosol	36.94	35.95
VIT_16s0098g00850.t01	Wine grape	cytosol	64.44	31.35

Protein Annotations

Gene3D:1.10.10.10	MapMan:21.6.1.7	Gene3D:3.40.50.150	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008171	GO:GO:0016740
GO:GO:0046983	InterPro:IPR016461	InterPro:IPR036388	InterPro:O-MeTrfase_COMT	InterPro:O_MeTrfase_2	PFAM:PF00891
PFAM:PF08100	PIRSF:PIRSF005739	PFscan:PS51683	PANTHER:PTHR11746	PANTHER:PTHR11746:SF120	InterPro:Plant_MeTrfase_dimerisation
InterPro:SAM-dependent_MTases	SUPFAM:SSF46785	SUPFAM:SSF53335	EnsemblPlantsGene:TraesCS7D01G341500	EnsemblPlants:TraesCS7D01G341500.1	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:437202755..437204380

Molecular Weight (calculated)

38730.0 Da

IEP (calculated)

5.834

GRAVY (calculated)

0.114

Length

360 amino acids

Sequence
(BLAST)

001: MGSTAADMAA SADEEACMYA LQLVSSSILP MTLKNAIELG LLETLVAAGG KLLTPAEVAA KLPSTANPAA ADMVDRMLRL LASYNVVSCT MEEGKDGRLS
101: RRYGAAPVCK FLTPNEDGVS MAALALMNQD KVLMESWYYL KDAVLDGGIP FNKAYGMSAF EYHGTDPRFN RVFNEGMKNH SIIITKKLLE VYKGFEGLGT
201: IVDVGGGVGA TVGAIVAAYP AIKGINFDLP HVISEAPPFP GVTHVGGDMF QKVPSGDAIL MKWILHDWSD EHCATLLKNC YDALPAHGKV VLVECILPVN
301: PEATPKAQGV FHVDMIMLAH NPGGRERYER EFEALAKGAG FKAIKTTYIY ANAFAIEFTK

Best Arabidopsis Sequence Match ( AT1G21130.1 )
(BLAST)

001: MGYLLEETLS SNSKTPIVID DDNELGLMAV RLANAAAFPM VLKAALELGV FDTLYAEASR SDSFLSPSEI ASKLPTTPRN PEAPVLLDRM LRLLASYSVV
101: KCGKVSEGKG ERVYRAEPIC RFFLKDNIQD IGSLASQVIV NFDSVFLNTW AQLKDVVLEG GDAFGRAHGG MKLFDYMGTD ERFSKLFNQT GFTIAVVKKA
201: LEVYQGFKGV NVLVDVGGGV GNTLGVVASK YPNIKGINFD LTCALAQAPS YPGVEHVAGD MFVDVPTGDA MILKRILHDW TDEDCVKILK NCWKSLPESG
301: KVVVIELVTP DEAENGDINA NIAFDMDMLM FTQCSGGKER SRAEFEALAA ASGFTHCKFV CQAYHCWIIE FCK

Arabidopsis Description

IGMT4Indole glucosinolate O-methyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.