Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54160.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT5G54160.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT5G54160.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G539100.1 | Wheat | cytosol | 78.19 | 78.41 |
| HORVU4Hr1G001250.1 | Barley | cytosol | 79.04 | 77.93 |
| TraesCS7D01G538900.1 | Wheat | endoplasmic reticulum, vacuole | 76.2 | 76.42 |
| TraesCS3D01G540200.1 | Wheat | cytosol | 69.69 | 69.1 |
| TraesCS7D01G341500.1 | Wheat | cytosol, golgi, unclear | 69.97 | 68.61 |
| TraesCS6D01G008200.1 | Wheat | cytosol | 68.56 | 68.56 |
| TraesCS1D01G359500.1 | Wheat | cytosol | 44.19 | 66.67 |
| TraesCS5D01G488900.1 | Wheat | cytosol | 63.17 | 63.17 |
| TraesCS5D01G488800.2 | Wheat | cytosol | 63.17 | 61.6 |
| TraesCS5D01G528600.1 | Wheat | cytosol | 62.61 | 61.22 |
| TraesCS2D01G052200.1 | Wheat | cytosol | 57.22 | 57.06 |
| CDY18302 | Canola | cytosol | 30.88 | 52.91 |
| CDY18304 | Canola | cytosol | 30.88 | 52.91 |
| KRH64288 | Soybean | cytosol, nucleus | 53.54 | 51.78 |
| KRH53639 | Soybean | cytosol | 53.26 | 51.37 |
| KRH53638 | Soybean | mitochondrion | 52.97 | 51.23 |
| KRH53640 | Soybean | cytosol | 52.97 | 51.23 |
| Solyc03g080180.2.1 | Tomato | extracellular | 51.27 | 50.7 |
| PGSC0003DMT400001512 | Potato | cytosol | 51.56 | 50.14 |
| AT5G54160.1 | Thale cress | cytosol | 51.27 | 49.86 |
| CDY55338 | Canola | cytosol | 41.64 | 49.66 |
| Bra026320.1-P | Field mustard | cytosol | 41.64 | 49.66 |
| CDY43839 | Canola | cytosol | 50.99 | 49.45 |
| KRH64289 | Soybean | cytosol | 46.46 | 49.25 |
| CDY43052 | Canola | cytosol | 50.71 | 49.18 |
| Bra029041.1-P | Field mustard | cytosol | 50.71 | 49.18 |
| CDY14330 | Canola | cytosol | 50.42 | 49.17 |
| Bra003007.1-P | Field mustard | cytosol | 50.42 | 48.9 |
| CDY14328 | Canola | cytosol | 50.42 | 48.9 |
| CDY18306 | Canola | cytosol | 50.14 | 48.63 |
| Bra003009.1-P | Field mustard | cytosol | 48.16 | 48.57 |
| Bra019031.1-P | Field mustard | cytosol | 50.42 | 48.5 |
| CDY29856 | Canola | cytosol | 50.14 | 48.23 |
| CDX92835 | Canola | cytosol | 49.58 | 47.68 |
| CDY19037 | Canola | cytosol | 49.01 | 46.88 |
| CDY19039 | Canola | cytosol | 46.18 | 46.31 |
| KRH14071 | Soybean | cytosol | 26.63 | 45.63 |
| CDY28789 | Canola | cytosol | 46.46 | 45.43 |
| Bra022700.1-P | Field mustard | cytosol | 46.46 | 45.43 |
| CDY41780 | Canola | cytosol | 32.01 | 44.14 |
| TraesCS1D01G033700.1 | Wheat | cytosol | 43.06 | 41.42 |
| TraesCS6D01G388700.1 | Wheat | cytosol | 35.69 | 34.05 |
| VIT_16s0098g00850.t01 | Wine grape | cytosol | 53.54 | 25.54 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.40.50.150 | MapMan:50.2.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008171 | GO:GO:0016740 |
| GO:GO:0046983 | InterPro:IPR016461 | InterPro:IPR036388 | InterPro:O-MeTrfase_COMT | InterPro:O_MeTrfase_2 | PFAM:PF00891 |
| PFAM:PF08100 | PIRSF:PIRSF005739 | PFscan:PS51683 | PANTHER:PTHR11746 | PANTHER:PTHR11746:SF120 | InterPro:Plant_MeTrfase_dimerisation |
| InterPro:SAM-dependent_MTases | SUPFAM:SSF46785 | SUPFAM:SSF53335 | EnsemblPlantsGene:TraesCS2D01G568300 | EnsemblPlants:TraesCS2D01G568300.1 | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:636372344..636373670
Molecular Weight (calculated)
38376.5 Da
IEP (calculated)
5.076
GRAVY (calculated)
0.026
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEEGCMYA VQLALSSVLP MTLKAAIELG LLETLVGAGE GTLSPEEVAA KLPAKANPEA AAMVDRMLRV LASHEIVSCV VEEGKDGSLS RRYGAAPVCK
101: WLTPNEEGVS MAAWAIIAQD KIFMDTWCYL KDAVLEGGSP FKKALGMSWF DYAGTDMRFN HLYNEAMKHH SGIITKKLLE LYTGFDGLGT LMDVGGGIGT
201: TIHAITSKYP SIKGINYDLP HVISEAPPYP GVQVQHVGGD MFEQVPSGTD AILMKWILNC FSDQQCATLL KNCYDALPAH GKVINIECIM PVNPDPTPSA
301: RGLIQIDMSL LAYSNGGKER YQRELEKLAM GAGFASVKST YIYANFWALE YTK
101: WLTPNEEGVS MAAWAIIAQD KIFMDTWCYL KDAVLEGGSP FKKALGMSWF DYAGTDMRFN HLYNEAMKHH SGIITKKLLE LYTGFDGLGT LMDVGGGIGT
201: TIHAITSKYP SIKGINYDLP HVISEAPPYP GVQVQHVGGD MFEQVPSGTD AILMKWILNC FSDQQCATLL KNCYDALPAH GKVINIECIM PVNPDPTPSA
301: RGLIQIDMSL LAYSNGGKER YQRELEKLAM GAGFASVKST YIYANFWALE YTK
001: MISLQTSGGS SEEEDMLLAI QLGGLNFVPY IVKTARELDL FEIMAKARPL GSYLSPVDLA SMAAPKNPHA PMMIDRLLRF LVAYSVCTCK LVKDEEGRES
101: RAYGLGKVGK KLIKDEDGFS IAPYVLAGCT KAKGGVWSYL TEAIQEGGAS AWERANEALI FEYMKKNENL KKIFNESMTN HTSIVMKKIL ENYIGFEGVS
201: DFVDVGGSLG SNLAQILSKY PHIKGINFDL PHIVKEAPQI HGVEHIGGDM FDEIPRGEVI LMKWILHDWN DEKCVEILKN CKKALPETGR IIVIEMIVPR
301: EVSETDLATK NSLSADLTMM SLTSGGKERT KKEFEDLAKE AGFKLPKIIY GAYSYWIIEL YPN
101: RAYGLGKVGK KLIKDEDGFS IAPYVLAGCT KAKGGVWSYL TEAIQEGGAS AWERANEALI FEYMKKNENL KKIFNESMTN HTSIVMKKIL ENYIGFEGVS
201: DFVDVGGSLG SNLAQILSKY PHIKGINFDL PHIVKEAPQI HGVEHIGGDM FDEIPRGEVI LMKWILHDWN DEKCVEILKN CKKALPETGR IIVIEMIVPR
301: EVSETDLATK NSLSADLTMM SLTSGGKERT KKEFEDLAKE AGFKLPKIIY GAYSYWIIEL YPN
Arabidopsis Description
F5F19.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.