Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54160.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT5G54160.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT5G54160.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G538900.1 | Wheat | endoplasmic reticulum, vacuole | 89.49 | 89.49 |
| TraesCS2D01G568300.1 | Wheat | cytosol | 78.41 | 78.19 |
| TraesCS6D01G008200.1 | Wheat | cytosol | 68.75 | 68.56 |
| TraesCS3D01G540200.1 | Wheat | cytosol | 68.18 | 67.42 |
| TraesCS7D01G341500.1 | Wheat | cytosol, golgi, unclear | 68.75 | 67.22 |
| TraesCS5D01G488900.1 | Wheat | cytosol | 64.2 | 64.02 |
| TraesCS1D01G359500.1 | Wheat | cytosol | 42.05 | 63.25 |
| TraesCS5D01G488800.2 | Wheat | cytosol | 64.77 | 62.98 |
| TraesCS5D01G528600.1 | Wheat | cytosol | 63.35 | 61.77 |
| TraesCS2D01G052200.1 | Wheat | cytosol | 57.95 | 57.63 |
| CDY18302 | Canola | cytosol | 32.1 | 54.85 |
| CDY18304 | Canola | cytosol | 32.1 | 54.85 |
| KRH64288 | Soybean | cytosol, nucleus | 54.55 | 52.6 |
| KRH53640 | Soybean | cytosol | 54.55 | 52.6 |
| KRH53638 | Soybean | mitochondrion | 54.55 | 52.6 |
| Solyc03g080180.2.1 | Tomato | extracellular | 53.12 | 52.38 |
| KRH53639 | Soybean | cytosol | 54.26 | 52.19 |
| PGSC0003DMT400001512 | Potato | cytosol | 53.69 | 52.07 |
| AT5G54160.1 | Thale cress | cytosol | 53.12 | 51.52 |
| KRH64289 | Soybean | cytosol | 48.3 | 51.05 |
| Bra003007.1-P | Field mustard | cytosol | 52.56 | 50.82 |
| CDY14328 | Canola | cytosol | 52.56 | 50.82 |
| CDY14330 | Canola | cytosol | 51.99 | 50.55 |
| CDY18306 | Canola | cytosol | 52.27 | 50.55 |
| CDY55338 | Canola | cytosol | 42.33 | 50.34 |
| Bra026320.1-P | Field mustard | cytosol | 42.33 | 50.34 |
| CDY43839 | Canola | cytosol | 51.99 | 50.27 |
| CDY43052 | Canola | cytosol | 51.7 | 50.0 |
| Bra029041.1-P | Field mustard | cytosol | 51.7 | 50.0 |
| Bra003009.1-P | Field mustard | cytosol | 49.72 | 50.0 |
| Bra019031.1-P | Field mustard | cytosol | 50.85 | 48.77 |
| CDY29856 | Canola | cytosol | 50.57 | 48.5 |
| CDY19037 | Canola | cytosol | 50.28 | 47.97 |
| CDX92835 | Canola | cytosol | 50.0 | 47.96 |
| CDY19039 | Canola | cytosol | 46.88 | 46.88 |
| KRH14071 | Soybean | cytosol | 26.99 | 46.12 |
| CDY28789 | Canola | cytosol | 47.16 | 45.98 |
| Bra022700.1-P | Field mustard | cytosol | 47.16 | 45.98 |
| CDY41780 | Canola | cytosol | 32.67 | 44.92 |
| TraesCS1D01G033700.1 | Wheat | cytosol | 44.03 | 42.23 |
| TraesCS6D01G388700.1 | Wheat | cytosol | 37.78 | 35.95 |
| VIT_16s0098g00850.t01 | Wine grape | cytosol | 55.11 | 26.22 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.40.50.150 | MapMan:50.2.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008171 | GO:GO:0016740 |
| GO:GO:0046983 | InterPro:IPR016461 | InterPro:IPR036388 | InterPro:O-MeTrfase_COMT | InterPro:O_MeTrfase_2 | PFAM:PF00891 |
| PFAM:PF08100 | PIRSF:PIRSF005739 | PFscan:PS51683 | PANTHER:PTHR11746 | PANTHER:PTHR11746:SF120 | InterPro:Plant_MeTrfase_dimerisation |
| InterPro:SAM-dependent_MTases | SUPFAM:SSF46785 | SUPFAM:SSF53335 | EnsemblPlantsGene:TraesCS7D01G539100 | EnsemblPlants:TraesCS7D01G539100.1 | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:629520625..629521761
Molecular Weight (calculated)
38582.7 Da
IEP (calculated)
5.240
GRAVY (calculated)
0.022
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEEGCMHA VQLALSSVLP MTLKAAIELG LLEILVGAGG EALSPEEVAA KLPAEANPDA ASMVDRMLRV LASHDIVSCM VEEGKDGNLS RRYSPAPVCK
101: WLTPNEDGVS MAPYVVVAQD KVFMEPWCYM KKAVLEGGSP FNMAYGMSWY DYAGTDPRFN RLFNEAMRHH SVIITKKLLE LYTGFEGVGT LVDVGGGIGT
201: TIHAITSKYP RIKGINFDLS HVISEAPPYP GVQVEHVGGD MFEKVPSGDA ILMKWILLSF TDDRCVALLK NCYNALPVHG KVINVECILP RNLDATHRVQ
301: GCVSADMSML ANSPDGKERY LTDFERLAKE AGFASVKATY IYTNFWAIEY TK
101: WLTPNEDGVS MAPYVVVAQD KVFMEPWCYM KKAVLEGGSP FNMAYGMSWY DYAGTDPRFN RLFNEAMRHH SVIITKKLLE LYTGFEGVGT LVDVGGGIGT
201: TIHAITSKYP RIKGINFDLS HVISEAPPYP GVQVEHVGGD MFEKVPSGDA ILMKWILLSF TDDRCVALLK NCYNALPVHG KVINVECILP RNLDATHRVQ
301: GCVSADMSML ANSPDGKERY LTDFERLAKE AGFASVKATY IYTNFWAIEY TK
001: MISLQTSGGS SEEEDMLLAI QLGGLNFVPY IVKTARELDL FEIMAKARPL GSYLSPVDLA SMAAPKNPHA PMMIDRLLRF LVAYSVCTCK LVKDEEGRES
101: RAYGLGKVGK KLIKDEDGFS IAPYVLAGCT KAKGGVWSYL TEAIQEGGAS AWERANEALI FEYMKKNENL KKIFNESMTN HTSIVMKKIL ENYIGFEGVS
201: DFVDVGGSLG SNLAQILSKY PHIKGINFDL PHIVKEAPQI HGVEHIGGDM FDEIPRGEVI LMKWILHDWN DEKCVEILKN CKKALPETGR IIVIEMIVPR
301: EVSETDLATK NSLSADLTMM SLTSGGKERT KKEFEDLAKE AGFKLPKIIY GAYSYWIIEL YPN
101: RAYGLGKVGK KLIKDEDGFS IAPYVLAGCT KAKGGVWSYL TEAIQEGGAS AWERANEALI FEYMKKNENL KKIFNESMTN HTSIVMKKIL ENYIGFEGVS
201: DFVDVGGSLG SNLAQILSKY PHIKGINFDL PHIVKEAPQI HGVEHIGGDM FDEIPRGEVI LMKWILHDWN DEKCVEILKN CKKALPETGR IIVIEMIVPR
301: EVSETDLATK NSLSADLTMM SLTSGGKERT KKEFEDLAKE AGFKLPKIIY GAYSYWIIEL YPN
Arabidopsis Description
F5F19.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.