Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54160.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT5G54160.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT5G54160.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18304 | Canola | cytosol | 50.0 | 56.8 |
| CDY18302 | Canola | cytosol | 50.0 | 56.8 |
| TraesCS3D01G540200.1 | Wheat | cytosol | 77.78 | 51.12 |
| TraesCS6D01G008200.1 | Wheat | cytosol | 76.92 | 50.99 |
| TraesCS7D01G341500.1 | Wheat | cytosol, golgi, unclear | 77.78 | 50.56 |
| Zm00001d049541_P001 | Maize | cytosol, extracellular, mitochondrion | 73.93 | 47.53 |
| EES14578 | Sorghum | cytosol | 73.08 | 47.24 |
| Os08t0157500-01 | Rice | cytosol, plasma membrane | 72.65 | 46.2 |
| KRH14071 | Soybean | cytosol | 39.32 | 44.66 |
| TraesCS2D01G568300.1 | Wheat | cytosol | 66.67 | 44.19 |
| TraesCS5D01G488900.1 | Wheat | cytosol | 66.24 | 43.91 |
| TraesCS5D01G528600.1 | Wheat | cytosol | 64.96 | 42.11 |
| TraesCS7D01G539100.1 | Wheat | cytosol | 63.25 | 42.05 |
| TraesCS7D01G538900.1 | Wheat | endoplasmic reticulum, vacuole | 62.82 | 41.76 |
| TraesCS5D01G488800.2 | Wheat | cytosol | 62.39 | 40.33 |
| TraesCS2D01G052200.1 | Wheat | cytosol | 60.26 | 39.83 |
| CDY43839 | Canola | cytosol | 61.11 | 39.29 |
| CDY43052 | Canola | cytosol | 60.68 | 39.01 |
| Bra029041.1-P | Field mustard | cytosol | 60.68 | 39.01 |
| CDY14328 | Canola | cytosol | 59.4 | 38.19 |
| Bra003007.1-P | Field mustard | cytosol | 59.4 | 38.19 |
| CDY18306 | Canola | cytosol | 59.4 | 38.19 |
| CDY14330 | Canola | cytosol | 58.97 | 38.12 |
| AT5G54160.1 | Thale cress | cytosol | 58.97 | 38.02 |
| Solyc03g080180.2.1 | Tomato | extracellular | 57.27 | 37.53 |
| Bra003009.1-P | Field mustard | cytosol | 55.98 | 37.43 |
| KRH53640 | Soybean | cytosol | 57.69 | 36.99 |
| PGSC0003DMT400001512 | Potato | cytosol | 57.27 | 36.91 |
| KRH64288 | Soybean | cytosol, nucleus | 57.27 | 36.71 |
| KRH53638 | Soybean | mitochondrion | 57.27 | 36.71 |
| KRH53639 | Soybean | cytosol | 57.27 | 36.61 |
| KRH64289 | Soybean | cytosol | 50.85 | 35.74 |
| Bra022700.1-P | Field mustard | cytosol | 53.42 | 34.63 |
| CDY28789 | Canola | cytosol | 53.42 | 34.63 |
| Bra019031.1-P | Field mustard | cytosol | 54.27 | 34.6 |
| CDX92835 | Canola | cytosol | 53.42 | 34.06 |
| CDY29856 | Canola | cytosol | 52.99 | 33.79 |
| CDY19037 | Canola | cytosol | 50.85 | 32.25 |
| CDY19039 | Canola | cytosol | 47.86 | 31.82 |
| Bra026320.1-P | Field mustard | cytosol | 38.89 | 30.74 |
| CDY55338 | Canola | cytosol | 38.89 | 30.74 |
| TraesCS1D01G033700.1 | Wheat | cytosol | 43.16 | 27.52 |
| TraesCS6D01G388700.1 | Wheat | cytosol | 39.32 | 24.86 |
| CDY41780 | Canola | cytosol | 26.92 | 24.61 |
| VIT_16s0098g00850.t01 | Wine grape | cytosol | 58.55 | 18.51 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G359500.1 | EnsemblPlantsGene:TraesCS1D01G359500 | Gene3D:3.40.50.150 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008171 | GO:GO:0016740 | InterPro:IPR016461 | InterPro:O-MeTrfase_COMT |
| InterPro:O_MeTrfase_2 | InterPro:SAM-dependent_MTases | PANTHER:PTHR11746 | PANTHER:PTHR11746:SF114 | PFAM:PF00891 | PFscan:PS51683 |
| SEG:seg | SUPFAM:SSF53335 | MapMan:50.2.1 | : | : | : |
Description
No Description!
Coordinates
chr1D:-:442902326..442906662
Molecular Weight (calculated)
26460.0 Da
IEP (calculated)
7.016
GRAVY (calculated)
-0.197
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQDKVVMES WYYLKESVLN GGTPFNKAHG MSAFEYLAKD TRFNRVFNEG MKSHSIIITR KLLEFYNGFD RVGTLIDIGG GIGTTLHAIT TKYPSIRGIN
101: FDLPHVASEA PPFPRVTHVG GDMFQKVPSG DMILMKWILH DWSDEHCITL LKNCYDALPA HGKVVVIECI LPEKENPNAT PRALFHVDMI MLAQNPGGKE
201: RYEREFRKLA MGAGFTDINT TYIYAEAWAI ELTK
101: FDLPHVASEA PPFPRVTHVG GDMFQKVPSG DMILMKWILH DWSDEHCITL LKNCYDALPA HGKVVVIECI LPEKENPNAT PRALFHVDMI MLAQNPGGKE
201: RYEREFRKLA MGAGFTDINT TYIYAEAWAI ELTK
001: MEEQNLSSYA MILSSSSVLP MVLKTAIDLG LFDILAESGP SSASQIFSLL SNETKKHHDS SLVNRILRFL ASYSILTCSV STEHGEPFAI YGLAPVAKYF
101: TKNQNGGGSL APMVNLFQDK VVTDMWYNLK DSVLEGGLPF NNTHGSSAVE LVGSDSRFRE VFQSSMKGFN EVFIEEFLKN YNGFDGVKSL VDVGGGDGSL
201: LSRIISKHTH IIKAINFDLP TVINTSLPSP GIEHVAGDMF TNTPKGEAIF MKWMLHSWDD DHCVKILSNC YQSLPSNGKV IVVDMVIPEF PGDTLLDRSL
301: FQFELFMMNM NPSGKERTKK EFEILARLAG FSNVQVPFTS LCFSVLEFHK NK
101: TKNQNGGGSL APMVNLFQDK VVTDMWYNLK DSVLEGGLPF NNTHGSSAVE LVGSDSRFRE VFQSSMKGFN EVFIEEFLKN YNGFDGVKSL VDVGGGDGSL
201: LSRIISKHTH IIKAINFDLP TVINTSLPSP GIEHVAGDMF TNTPKGEAIF MKWMLHSWDD DHCVKILSNC YQSLPSNGKV IVVDMVIPEF PGDTLLDRSL
301: FQFELFMMNM NPSGKERTKK EFEILARLAG FSNVQVPFTS LCFSVLEFHK NK
Arabidopsis Description
At1g33030 [Source:UniProtKB/TrEMBL;Acc:Q9MAP0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.