Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54160.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT5G54160.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT5G54160.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G539100.1 | Wheat | cytosol | 89.49 | 89.49 |
| TraesCS2D01G568300.1 | Wheat | cytosol | 76.42 | 76.2 |
| TraesCS6D01G008200.1 | Wheat | cytosol | 66.19 | 66.01 |
| TraesCS7D01G341500.1 | Wheat | cytosol, golgi, unclear | 67.33 | 65.83 |
| TraesCS3D01G540200.1 | Wheat | cytosol | 66.48 | 65.73 |
| TraesCS5D01G488900.1 | Wheat | cytosol | 64.2 | 64.02 |
| TraesCS1D01G359500.1 | Wheat | cytosol | 41.76 | 62.82 |
| TraesCS5D01G488800.2 | Wheat | cytosol | 63.64 | 61.88 |
| TraesCS5D01G528600.1 | Wheat | cytosol | 61.65 | 60.11 |
| TraesCS2D01G052200.1 | Wheat | cytosol | 57.39 | 57.06 |
| CDY18302 | Canola | cytosol | 33.24 | 56.8 |
| CDY18304 | Canola | cytosol | 33.24 | 56.8 |
| KRH64288 | Soybean | cytosol, nucleus | 55.11 | 53.15 |
| KRH53640 | Soybean | cytosol | 55.11 | 53.15 |
| Solyc03g080180.2.1 | Tomato | extracellular | 53.69 | 52.94 |
| PGSC0003DMT400001512 | Potato | cytosol | 54.26 | 52.62 |
| KRH53638 | Soybean | mitochondrion | 54.55 | 52.6 |
| KRH53639 | Soybean | cytosol | 54.55 | 52.46 |
| Bra026320.1-P | Field mustard | cytosol | 44.03 | 52.36 |
| CDY55338 | Canola | cytosol | 44.03 | 52.36 |
| CDY14330 | Canola | cytosol | 53.41 | 51.93 |
| Bra003009.1-P | Field mustard | cytosol | 51.14 | 51.43 |
| AT5G54160.1 | Thale cress | cytosol | 52.56 | 50.96 |
| Bra003007.1-P | Field mustard | cytosol | 52.56 | 50.82 |
| CDY18306 | Canola | cytosol | 52.56 | 50.82 |
| CDY14328 | Canola | cytosol | 52.56 | 50.82 |
| CDY43839 | Canola | cytosol | 51.99 | 50.27 |
| KRH64289 | Soybean | cytosol | 47.44 | 50.15 |
| CDY43052 | Canola | cytosol | 51.7 | 50.0 |
| Bra029041.1-P | Field mustard | cytosol | 51.7 | 50.0 |
| CDY19037 | Canola | cytosol | 51.7 | 49.32 |
| Bra019031.1-P | Field mustard | cytosol | 51.42 | 49.32 |
| CDY29856 | Canola | cytosol | 51.14 | 49.05 |
| CDY19039 | Canola | cytosol | 48.58 | 48.58 |
| CDX92835 | Canola | cytosol | 50.57 | 48.5 |
| KRH14071 | Soybean | cytosol | 27.27 | 46.6 |
| CDY28789 | Canola | cytosol | 47.16 | 45.98 |
| Bra022700.1-P | Field mustard | cytosol | 47.16 | 45.98 |
| CDY41780 | Canola | cytosol | 32.39 | 44.53 |
| TraesCS1D01G033700.1 | Wheat | cytosol | 42.05 | 40.33 |
| TraesCS6D01G388700.1 | Wheat | cytosol | 37.22 | 35.41 |
| VIT_16s0098g00850.t01 | Wine grape | cytosol | 54.55 | 25.95 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.40.50.150 | MapMan:50.2.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008171 | GO:GO:0016740 |
| GO:GO:0046983 | InterPro:IPR016461 | InterPro:IPR036388 | InterPro:O-MeTrfase_COMT | InterPro:O_MeTrfase_2 | PFAM:PF00891 |
| PFAM:PF08100 | PIRSF:PIRSF005739 | PFscan:PS51683 | PANTHER:PTHR11746 | PANTHER:PTHR11746:SF120 | InterPro:Plant_MeTrfase_dimerisation |
| InterPro:SAM-dependent_MTases | SUPFAM:SSF46785 | SUPFAM:SSF53335 | EnsemblPlantsGene:TraesCS7D01G538900 | EnsemblPlants:TraesCS7D01G538900.1 | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:629449765..629450900
Molecular Weight (calculated)
38597.7 Da
IEP (calculated)
4.889
GRAVY (calculated)
0.091
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEEGCMYA VQLALSSVLP MTLKAAIELG LLEILVGADG ESLSPEEVAA ELPVNANPDA ASMVDRMLRV LASHKIVSCM VKEGKDGSIS RRYSPAPVCK
101: WLSPNEDGVS MAPYVVLAQD KVFMAPWCYM KDVVLEGGSP FDKAYGMSWY DYAGTDTRFN SLFNEAMRHH SIIITKKLLE LYTGFEGVGT LVDVGGGIGT
201: TVHAIVSKYP SIKGINFDLP HVISEAPPYP GLQVEHVGGD MFDKVPSGDA ILMKWILLHF RDETCVALLK NCYHALPVNG KVINMECILP AELDATHRVQ
301: GCVSADMSML AYSPDGKERY LTDFERLAKE AGFASVKATY IYTNFWAIEY IK
101: WLSPNEDGVS MAPYVVLAQD KVFMAPWCYM KDVVLEGGSP FDKAYGMSWY DYAGTDTRFN SLFNEAMRHH SIIITKKLLE LYTGFEGVGT LVDVGGGIGT
201: TVHAIVSKYP SIKGINFDLP HVISEAPPYP GLQVEHVGGD MFDKVPSGDA ILMKWILLHF RDETCVALLK NCYHALPVNG KVINMECILP AELDATHRVQ
301: GCVSADMSML AYSPDGKERY LTDFERLAKE AGFASVKATY IYTNFWAIEY IK
001: MGYLLEETLS SNSKTPIVID DDNELGLMAV RLANAAAFPM VLKAALELGV FDTLYAEASR SDSFLSPSEI ASKLPTTPRN PEAPVLLDRM LRLLASYSVV
101: KCGKVSEGKG ERVYRAEPIC RFFLKDNIQD IGSLASQVIV NFDSVFLNTW AQLKDVVLEG GDAFGRAHGG MKLFDYMGTD ERFSKLFNQT GFTIAVVKKA
201: LEVYQGFKGV NVLVDVGGGV GNTLGVVASK YPNIKGINFD LTCALAQAPS YPGVEHVAGD MFVDVPTGDA MILKRILHDW TDEDCVKILK NCWKSLPESG
301: KVVVIELVTP DEAENGDINA NIAFDMDMLM FTQCSGGKER SRAEFEALAA ASGFTHCKFV CQAYHCWIIE FCK
101: KCGKVSEGKG ERVYRAEPIC RFFLKDNIQD IGSLASQVIV NFDSVFLNTW AQLKDVVLEG GDAFGRAHGG MKLFDYMGTD ERFSKLFNQT GFTIAVVKKA
201: LEVYQGFKGV NVLVDVGGGV GNTLGVVASK YPNIKGINFD LTCALAQAPS YPGVEHVAGD MFVDVPTGDA MILKRILHDW TDEDCVKILK NCWKSLPESG
301: KVVVIELVTP DEAENGDINA NIAFDMDMLM FTQCSGGKER SRAEFEALAA ASGFTHCKFV CQAYHCWIIE FCK
Arabidopsis Description
IGMT4Indole glucosinolate O-methyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPU8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.