CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54160.1	KRH42483	AT2G01950.1	19000166
AT5G54160.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53640	Soybean	cytosol	96.44	96.44
KRH53638	Soybean	mitochondrion	95.34	95.34
KRH53639	Soybean	cytosol	95.34	95.08
KRH64289	Soybean	cytosol	85.75	93.99
CDY18302	Canola	cytosol	46.03	81.55
CDY18304	Canola	cytosol	46.03	81.55
CDY43839	Canola	cytosol	78.08	78.3
AT5G54160.1	Thale cress	cytosol	77.81	78.24
PGSC0003DMT400001512	Potato	cytosol	77.81	78.24
Bra029041.1-P	Field mustard	cytosol	77.81	78.02
CDY43052	Canola	cytosol	77.81	78.02
Solyc03g080180.2.1	Tomato	extracellular	75.89	77.59
CDY18306	Canola	cytosol	76.71	76.92
Bra019031.1-P	Field mustard	cytosol	76.99	76.57
CDX92835	Canola	cytosol	76.99	76.57
Bra003007.1-P	Field mustard	cytosol	76.16	76.37
CDY14328	Canola	cytosol	76.16	76.37
CDY29856	Canola	cytosol	76.44	76.02
CDY14330	Canola	cytosol	75.07	75.69
Bra003009.1-P	Field mustard	cytosol	72.05	75.14
CDY19037	Canola	cytosol	69.86	69.11
Bra026320.1-P	Field mustard	cytosol	55.34	68.24
CDY55338	Canola	cytosol	55.34	68.24
CDY19039	Canola	cytosol	64.93	67.33
GSMUA_Achr9P23460_001	Banana	cytosol	61.1	66.77
GSMUA_Achr3P27470_001	Banana	cytosol	65.48	66.02
Bra022700.1-P	Field mustard	cytosol	64.93	65.65
CDY28789	Canola	cytosol	64.93	65.65
KRH14071	Soybean	cytosol	36.99	65.53
GSMUA_Achr1P06370_001	Banana	cytosol	64.11	64.11
TraesCS3B01G612000.1	Wheat	cytosol	61.92	63.48
TraesCS3A01G534900.1	Wheat	cytosol	61.64	63.2
TraesCS6D01G008200.1	Wheat	cytosol	61.1	63.17
TraesCS7A01G333900.1	Wheat	cytosol	62.19	63.06
TraesCS3D01G540200.1	Wheat	cytosol	61.37	62.92
TraesCS7D01G341500.1	Wheat	cytosol, golgi, unclear	61.92	62.78
CDY41780	Canola	cytosol	43.84	62.5
HORVU7Hr1G082280.1	Barley	cytosol	61.37	62.22
TraesCS7B01G245500.1	Wheat	cytosol	61.1	61.94
EES14578	Sorghum	cytosol	61.1	61.6
TraesCS6A01G005600.1	Wheat	cytosol	59.45	61.47
GSMUA_Achr2P04360_001	Banana	cytosol	61.1	61.43
Zm00001d049541_P001	Maize	cytosol, extracellular, mitochondrion	61.1	61.26
GSMUA_AchrUn_...	Banana	cytosol	60.55	60.88
TraesCS6B01G011100.1	Wheat	cytosol	60.0	60.83
GSMUA_AchrUn_...	Banana	cytosol	59.18	59.67
GSMUA_Achr4P24480_001	Banana	cytosol	58.9	59.56
Os08t0157500-01	Rice	cytosol, plasma membrane	60.0	59.51
GSMUA_Achr9P23490_001	Banana	cytosol	35.34	59.45
TraesCS4A01G344100.1	Wheat	cytosol	37.53	58.55
GSMUA_Achr2P04380_001	Banana	cytosol	58.08	58.24
GSMUA_Achr2P04420_001	Banana	cytosol	57.81	58.13
GSMUA_Achr9P23470_001	Banana	cytosol	53.15	58.08
GSMUA_Achr2P04390_001	Banana	cytosol	56.99	57.46
GSMUA_Achr2P04860_001	Banana	cytosol	57.26	57.42
TraesCS1D01G359500.1	Wheat	cytosol	36.71	57.27
GSMUA_Achr2P04470_001	Banana	cytosol	56.44	56.91
GSMUA_Achr2P04410_001	Banana	cytosol	56.16	56.63
TraesCS5D01G528600.1	Wheat	cytosol	55.62	56.23
TraesCSU01G152500.1	Wheat	cytosol	55.34	56.11
GSMUA_Achr2P04820_001	Banana	cytosol	50.41	56.1
GSMUA_Achr2P04480_001	Banana	cytosol	34.79	55.46
TraesCS1A01G407500.1	Wheat	cytosol	48.77	55.45
GSMUA_Achr10P...	Banana	cytosol	54.79	55.25
TraesCS7D01G538900.1	Wheat	endoplasmic reticulum, vacuole	53.15	55.11
HORVU3Hr1G116770.1	Barley	cytosol	60.82	55.09
HORVU7Hr1G088940.1	Barley	cytosol	33.97	54.87
TraesCS7D01G539100.1	Wheat	cytosol	52.6	54.55
TraesCS5D01G488900.1	Wheat	cytosol	52.6	54.39
TraesCS5D01G488800.2	Wheat	cytosol	53.7	54.14
TraesCS2B01G066100.1	Wheat	cytosol	52.6	53.78
HORVU1Hr1G011930.1	Barley	cytosol	51.78	53.69
HORVU1Hr1G003370.2	Barley	cytosol	52.05	53.67
GSMUA_Achr2P04840_001	Banana	cytosol	44.38	53.64
TraesCS2D01G568300.1	Wheat	cytosol	51.78	53.54
TraesCS2A01G051600.2	Wheat	cytosol	52.33	53.5
KRG97256	Soybean	cytosol	54.52	53.49
HORVU4Hr1G001250.1	Barley	cytosol	52.05	53.07
TraesCSU01G024300.1	Wheat	cytosol	51.78	52.94
TraesCS2B01G617300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.41	52.42
KRH47769	Soybean	cytosol	50.68	52.26
GSMUA_AchrUn_...	Banana	cytosol, vacuole	51.51	52.08
GSMUA_AchrUn_...	Banana	cytosol	51.51	52.08
HORVU2Hr1G119660.1	Barley	cytosol	51.51	51.93
TraesCS5B01G036200.1	Wheat	vacuole	49.86	51.85
GSMUA_Achr9P28010_001	Banana	cytosol, plasma membrane, vacuole	50.68	51.82
TraesCS2B01G065800.1	Wheat	cytosol	15.89	51.79
TraesCSU01G183500.1	Wheat	cytosol	15.89	51.79
HORVU1Hr1G089620.1	Barley	cytosol	53.15	51.73
TraesCS2D01G052200.1	Wheat	cytosol	49.86	51.41
TraesCS5B01G036100.1	Wheat	endoplasmic reticulum, vacuole	49.32	51.28
TraesCSU01G013300.1	Wheat	cytosol	49.86	50.98
HORVU3Hr1G049400.1	Barley	cytosol	22.47	50.93
GSMUA_AchrUn_...	Banana	cytosol	38.63	50.9
TraesCSU01G001300.1	Wheat	cytosol	15.62	50.89
GSMUA_Achr2P04370_001	Banana	cytosol	50.41	50.83
GSMUA_AchrUn_...	Banana	cytosol	41.64	50.33
KRH47770	Soybean	cytosol	50.96	50.0
GSMUA_Achr9P18820_001	Banana	mitochondrion	47.4	49.57
KRH29977	Soybean	cytosol	49.59	49.45
KRH34966	Soybean	cytosol	49.86	49.32
KRG91815	Soybean	cytosol	48.49	49.17
HORVU7Hr1G119480.2	Barley	cytosol	46.58	47.62
Os04t0176200-00	Rice	cytosol	30.41	47.23
KRH47768	Soybean	cytosol	41.92	46.79
KRH01239	Soybean	cytosol	47.12	45.5
GSMUA_Achr2P04400_001	Banana	cytosol, golgi, mitochondrion	52.33	45.48
KRH40859	Soybean	cytosol	43.01	43.98
KRG89137	Soybean	cytosol	44.11	43.51
KRG89138	Soybean	golgi	21.64	43.17
Os04t0104900-01	Rice	cytosol	41.64	42.94
Os04t0175600-01	Rice	plasma membrane	44.38	42.86
Zm00001d048087_P001	Maize	cytosol	42.47	42.47
Os12t0240900-01	Rice	cytosol	43.29	42.13
VIT_16s0098g00850.t01	Wine grape	cytosol	83.84	41.35
KRH40858	Soybean	endoplasmic reticulum	41.64	41.19
Os04t0175900-01	Rice	cytosol, plasma membrane	41.64	40.97
OQU93005	Sorghum	cytosol	40.82	40.93
OQU79974	Sorghum	cytosol	41.1	40.65
TraesCS3B01G448600.1	Wheat	cytosol	40.82	40.27
TraesCS1B01G040400.1	Wheat	cytosol	26.03	40.25
HORVU1Hr1G089700.1	Barley	cytosol, vacuole	39.45	39.34
KXG24559	Sorghum	cytosol	40.0	38.73
TraesCS1D01G033700.1	Wheat	cytosol	38.9	38.69
KRH21852	Soybean	cytosol, nucleus	37.53	38.59
KXG24554	Sorghum	cytosol	39.73	38.56
EES13432	Sorghum	cytosol, plastid, vacuole	39.45	38.5
KRH13467	Soybean	cytosol	37.53	38.48
Os12t0202700-00	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	22.74	37.56
KRH25535	Soybean	cytosol	37.26	37.47
TraesCS1A01G032000.1	Wheat	cytosol	37.26	37.06
TraesCS1B01G041100.1	Wheat	cytosol	36.99	36.78
KRH56001	Soybean	cytosol	36.71	36.31
KRH31595	Soybean	cytoskeleton, cytosol, endoplasmic reticulum	32.88	32.79
Os12t0199500-00	Rice	cytosol	18.63	32.54

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100780100	MapMan:21.6.1.7	Gene3D:3.40.50.150	EMBL:ACUP02002752	EMBL:BT097482
UniProt:C6TIJ7	EnsemblPlantsGene:GLYMA_04G227700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008171	GO:GO:0008757	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019438	GO:GO:0032259	GO:GO:0046983	InterPro:IPR016461
InterPro:IPR036388	EnsemblPlants:KRH64288	ProteinID:KRH64288	ProteinID:KRH64288.1	InterPro:O-MeTrfase_COMT	InterPro:O_MeTrfase_2
PFAM:PF00891	PFAM:PF08100	PIRSF:PIRSF005739	PFscan:PS51683	PANTHER:PTHR11746	PANTHER:PTHR11746:SF114
InterPro:Plant_MeTrfase_dimerisation	InterPro:SAM-dependent_MTases	SUPFAM:SSF46785	SUPFAM:SSF53335	UniParc:UPI000189DA08	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:49704300..49706536

Molecular Weight (calculated)

39971.6 Da

IEP (calculated)

6.084

GRAVY (calculated)

0.078

Length

365 amino acids

Sequence
(BLAST)

001: MGSTGETQIT PTHVSDEEAN LFAMQLASAS VLPMVLKSAL ELDLLEIIAK AGPGVHLSPS DIASRLPTHN PDAPVMLDRI LRLLACYNIL SFSLRTLPHG
101: KVERLYGLAP VAKYLVRNED GVSIAALNLM NQDKILMESW YYLKDAVLEG GIPFNKAYGM TAFEYHGTDP RFNKVFNKGM ADHSTITMKK ILETYTGFEG
201: LKSLVDVGGG TGAVVNMIVS KYPTIKGINF DLPHVIEDAP SYPGVEHVGG DMFVSVPKAD AIFMKWICHD WSDEHCLKFL KNCYEALPDN GKVIVAECIL
301: PVAPDSSLAT KGVVHIDVIM LAHNPGGKER TEKEFEALAK GSGFQGFQVL CCAFNTYVME FLKKV

Best Arabidopsis Sequence Match ( AT5G54160.1 )
(BLAST)

001: MGSTAETQLT PVQVTDDEAA LFAMQLASAS VLPMALKSAL ELDLLEIMAK NGSPMSPTEI ASKLPTKNPE APVMLDRILR LLTSYSVLTC SNRKLSGDGV
101: ERIYGLGPVC KYLTKNEDGV SIAALCLMNQ DKVLMESWYH LKDAILDGGI PFNKAYGMSA FEYHGTDPRF NKVFNNGMSN HSTITMKKIL ETYKGFEGLT
201: SLVDVGGGIG ATLKMIVSKY PNLKGINFDL PHVIEDAPSH PGIEHVGGDM FVSVPKGDAI FMKWICHDWS DEHCVKFLKN CYESLPEDGK VILAECILPE
301: TPDSSLSTKQ VVHVDCIMLA HNPGGKERTE KEFEALAKAS GFKGIKVVCD AFGVNLIELL KKL

Arabidopsis Description

OMT1Flavone 3'-O-methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK25]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.