CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13467	Soybean	cytosol	94.37	94.1
VIT_08s0007g04520.t01	Wine grape	cytosol	76.06	75.42
AT3G53140.1	Thale cress	cytosol	75.49	74.65
Bra040689.1-P	Field mustard	cytosol	73.52	72.7
CDY70033	Canola	cytosol	47.04	72.61
CDX95399	Canola	cytosol	72.96	72.14
PGSC0003DMT400022143	Potato	cytosol	72.96	71.75
CDX76223	Canola	cytosol	52.96	70.15
Solyc10g085830.1.1	Tomato	plastid	71.27	70.08
GSMUA_Achr11P...	Banana	cytosol	28.17	68.03
HORVU6Hr1G092780.2	Barley	cytosol	23.94	62.5
TraesCS6A01G405200.1	Wheat	cytosol	63.38	61.98
Os02t0823400-01	Rice	cytosol	63.38	61.64
TraesCS6B01G449400.1	Wheat	cytosol	63.66	61.08
TraesCS6D01G388700.1	Wheat	cytosol	63.38	60.81
EES06050	Sorghum	cytosol, plastid	63.38	59.68
Zm00001d051870_P001	Maize	cytosol	62.25	59.09
HORVU6Hr1G092840.2	Barley	cytosol	43.1	52.04
KRH64289	Soybean	cytosol	36.06	38.44
KRH14071	Soybean	cytosol	21.97	37.86
KRH64288	Soybean	cytosol, nucleus	38.59	37.53
KRH53640	Soybean	cytosol	38.59	37.53
KRH53639	Soybean	cytosol	38.31	37.16
KRH53638	Soybean	mitochondrion	38.03	36.99
KRH34966	Soybean	cytosol	36.9	35.5
KRG91815	Soybean	cytosol	35.77	35.28
KRH40859	Soybean	cytosol	34.65	34.45
KRH40858	Soybean	endoplasmic reticulum	34.65	33.33
KRH01239	Soybean	cytosol	35.49	33.33
KRG89137	Soybean	cytosol	34.37	32.97
KRH47770	Soybean	cytosol	34.37	32.8
KRG89138	Soybean	golgi	16.9	32.79
KRG97256	Soybean	cytosol	34.08	32.53
KRH29977	Soybean	cytosol	33.24	32.24
KRH47769	Soybean	cytosol	31.83	31.92
KRH56001	Soybean	cytosol	31.55	30.35
KRH25535	Soybean	cytosol	30.99	30.3
KRH47768	Soybean	cytosol	27.61	29.97
KRH31595	Soybean	cytoskeleton, cytosol, endoplasmic reticulum	27.32	26.5

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100784957	Gene3D:3.40.50.150	MapMan:7.9.6.1	EMBL:ACUP02008366	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G263200	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008171	GO:GO:0008757	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019438
GO:GO:0032259	UniProt:I1M2U5	InterPro:IPR016461	InterPro:IPR036388	ProteinID:KRH21851.1	EnsemblPlants:KRH21852
ProteinID:KRH21852	ProteinID:KRH21852.1	InterPro:O-MeTrfase_COMT	InterPro:O_MeTrfase_2	PFAM:PF00891	PIRSF:PIRSF005739
PFscan:PS51683	PANTHER:PTHR11746	PANTHER:PTHR11746:SF90	InterPro:SAM-dependent_MTases	SUPFAM:SSF46785	SUPFAM:SSF53335
UniParc:UPI000233B523	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:36652023..36663332

Molecular Weight (calculated)

39916.1 Da

IEP (calculated)

5.876

GRAVY (calculated)

-0.241

Length

355 amino acids

Sequence
(BLAST)

001: MEKEESTEQR KQARLAIMEL ANMISVPMAL NAVVRLNVAD AIWQGGANNP LSAAEILPRL LPAGGGDAEN LQRLLRMLAS YGVFYEHLSA GERKYSLTDV
101: GKTLVTDEQG LSYAHYVLQH HQDALMRAWP MVHEAVVDPT KEPFERANGE PAYGYYLKHP EMNDLMVRAM SGVSVPFIRA MLEGYDGFQG VEKLVDVGGS
201: GGDCLRMILE KHPTIKEGIN FDLPEVVAKA PQIPFVTHVG GDMFKFIPQG DAIFMKWVLT TWTDEECKHI MQNCHKALPE GGKLIACEPV LPEDSDESHR
301: TRALLEGDIF VMTIYRAKGK HRTEEQFRQL AIDAGFPRFR AFHVDHFYTV LEFQK

Best Arabidopsis Sequence Match ( AT3G53140.1 )
(BLAST)

001: MENESSESRN RARLAIMELA NMISVPMSLN AAVRLGIADA IWNGGANSPL SAAEILPRLH LPSHTTIGGD PENLQRILRM LTSYGVFSEH LVGSIERKYS
101: LTDVGKTLVT DSGGLSYAAY VLQHHQEALM RAWPLVHTAV VEPETEPYVK ANGEAAYAQY GKSEEMNGLM QKAMSGVSVP FMKAILDGYD GFKSVDILVD
201: VGGSAGDCLR MILQQFPNVR EGINFDLPEV VAKAPNIPGV THVGGDMFQS VPSADAIFMK WVLTTWTDEE CKQIMKNCYN ALPVGGKLIA CEPVLPKETD
301: ESHRTRALLE GDIFVMTIYR TKGKHRTEEE FIELGLSAGF PTFRPFYIDY FYTILEFQK

Arabidopsis Description

AT3g53140/T4D2_70 [Source:UniProtKB/TrEMBL;Acc:Q9SCP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.