Factsheet for Solyc10g085830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022143	Potato	cytosol	95.29	95.29
KRH21852	Soybean	cytosol, nucleus	70.08	71.27
KRH13467	Soybean	cytosol	70.08	71.07
VIT_08s0007g04520.t01	Wine grape	cytosol	69.53	70.11
CDY70033	Canola	cytosol	44.32	69.57
AT3G53140.1	Thale cress	cytosol	68.14	68.52
Bra040689.1-P	Field mustard	cytosol	67.04	67.41
CDX95399	Canola	cytosol	67.04	67.41
CDX76223	Canola	cytosol	47.65	64.18
GSMUA_Achr11P...	Banana	cytosol	25.21	61.9
HORVU6Hr1G092780.2	Barley	cytosol	22.16	58.82
TraesCS6A01G405200.1	Wheat	cytosol	56.79	56.47
TraesCS6B01G449400.1	Wheat	cytosol	57.34	55.95
Os02t0823400-01	Rice	cytosol	56.23	55.62
TraesCS6D01G388700.1	Wheat	cytosol	56.79	55.41
Zm00001d051870_P001	Maize	cytosol	55.68	53.74
EES06050	Sorghum	cytosol, plastid	55.68	53.32
HORVU6Hr1G092840.2	Barley	cytosol	37.95	46.6
Solyc06g060200.1.1	Tomato	cytosol	15.79	45.24
Solyc06g083450.2.1	Tomato	cytosol	24.1	37.83
Solyc03g080180.2.1	Tomato	extracellular	34.9	35.29
Solyc06g060220.1.1	Tomato	cytosol	11.08	34.19
Solyc10g005060.2.1	Tomato	cytosol	34.35	34.07
Solyc06g007960.2.1	Tomato	cytosol	30.19	30.19
Solyc01g111900.2.1	Tomato	cytosol	27.7	28.01
Solyc12g009110.1.1	Tomato	cytosol	27.7	27.1

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.50.150	MapMan:7.9.6.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0008171	GO:GO:0008757	GO:GO:0008938	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019438	GO:GO:0032259	GO:GO:1901847	InterPro:IPR016461	InterPro:IPR036388
UniProt:K4D417	InterPro:O-MeTrfase_COMT	InterPro:O_MeTrfase_2	PFAM:PF00891	PIRSF:PIRSF005739	PFscan:PS51683
PANTHER:PTHR11746	PANTHER:PTHR11746:SF90	InterPro:SAM-dependent_MTases	SUPFAM:SSF46785	SUPFAM:SSF53335	EnsemblPlantsGene:Solyc10g085830.1
EnsemblPlants:Solyc10g085830.1.1	UniParc:UPI000276AA42	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:64899145..64901524

Molecular Weight (calculated)

40207.1 Da

IEP (calculated)

5.765

GRAVY (calculated)

-0.356

Length

361 amino acids

Sequence
(BLAST)

001: MENANGEPSN NNNNDERLAI MELANMISVP MSLNAVVKLK VTDAVWENGS NAPLSPVEIL AKIRGPQGGG DAENLQRILR MLTSYGVFKE HVDDGSQRRY
101: SLTKVGKTLV TDENGLSHGS YVLQHHQDAL MKAWTMVHEA VNDSSIEPFA KANGEPAYSY YGKNSEMNSL MLNAMSGVSV PFMKAILQGY DGFQGVKTLV
201: DVGGSGGDCL KMILEKHTDI ELGINFDLPE VVEKAPQIPS IKHVGGDMFD YIPKGDAIFM KWVLTTWTDD ECKEIMKSCY NALPEKGKFI ACEPVLPHHT
301: DDSKRTRALL EGDIFVMTIY RAKGKHRTEE EYRQLGRAAG FNECKGFYID HFFTILEFHK S

Best Arabidopsis Sequence Match ( AT3G53140.1 )
(BLAST)

001: MENESSESRN RARLAIMELA NMISVPMSLN AAVRLGIADA IWNGGANSPL SAAEILPRLH LPSHTTIGGD PENLQRILRM LTSYGVFSEH LVGSIERKYS
101: LTDVGKTLVT DSGGLSYAAY VLQHHQEALM RAWPLVHTAV VEPETEPYVK ANGEAAYAQY GKSEEMNGLM QKAMSGVSVP FMKAILDGYD GFKSVDILVD
201: VGGSAGDCLR MILQQFPNVR EGINFDLPEV VAKAPNIPGV THVGGDMFQS VPSADAIFMK WVLTTWTDEE CKQIMKNCYN ALPVGGKLIA CEPVLPKETD
301: ESHRTRALLE GDIFVMTIYR TKGKHRTEEE FIELGLSAGF PTFRPFYIDY FYTILEFQK

Arabidopsis Description

AT3g53140/T4D2_70 [Source:UniProtKB/TrEMBL;Acc:Q9SCP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.