CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytoskeleton, cytosol

Predictor Summary:

cytosol 2
endoplasmic reticulum 1
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99348
KRH45659

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35160.1	KRG99348	AT3G60820.1	21798944
AT4G35160.1	KRH45659	AT3G60820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g03090.t01	Wine grape	cytosol	61.48	63.74
PGSC0003DMT400000736	Potato	cytosol	42.35	61.26
VIT_03s0038g03080.t01	Wine grape	cytosol	59.02	59.02
PGSC0003DMT400047989	Potato	cytosol	52.73	57.27
Solyc01g111900.2.1	Tomato	cytosol	55.19	56.58
PGSC0003DMT400047988	Potato	cytosol	54.92	56.3
Solyc12g009110.1.1	Tomato	cytosol	56.56	56.1
PGSC0003DMT400095923	Potato	cytosol	57.1	53.05
CDX76316	Canola	cytosol	45.9	50.91
AT4G35150.1	Thale cress	cytosol	44.81	50.46
Bra034677.1-P	Field mustard	cytosol	50.27	50.0
CDY09082	Canola	cytosol	26.78	49.49
CDY67664	Canola	cytosol	42.9	49.06
Bra038396.1-P	Field mustard	cytosol	48.91	48.77
Bra017700.1-P	Field mustard	cytosol	48.91	48.77
CDX72522	Canola	cytosol	42.62	48.75
CDY17512	Canola	cytosol	47.27	48.73
AT4G35160.1	Thale cress	cytosol	50.55	48.43
CDX72521	Canola	cytosol	42.9	48.01
CDY09084	Canola	cytosol	44.54	47.94
CDY17514	Canola	cytosol	45.63	47.85
Bra017699.1-P	Field mustard	cytosol	47.54	47.54
CDY51573	Canola	cytosol	48.63	45.29
Bra034678.1-P	Field mustard	cytosol	34.7	45.2
CDY67665	Canola	cytosol	33.61	43.93
KRH25535	Soybean	cytosol	39.07	39.39
KRH56001	Soybean	cytosol	38.8	38.48
KRH14071	Soybean	cytosol	18.85	33.5
KRH64288	Soybean	cytosol, nucleus	32.79	32.88
KRH53640	Soybean	cytosol	32.24	32.33
KRH53639	Soybean	cytosol	32.24	32.24
KRH53638	Soybean	mitochondrion	31.97	32.05
KRH47769	Soybean	cytosol	30.87	31.92
KRH64289	Soybean	cytosol	28.96	31.83
KRG89138	Soybean	golgi	15.85	31.69
KRG91815	Soybean	cytosol	30.05	30.56
KRG97256	Soybean	cytosol	30.33	29.84
KRH47768	Soybean	cytosol	26.5	29.66
KRH47770	Soybean	cytosol	29.51	29.03
KRH34966	Soybean	cytosol	29.23	29.0
KRH13467	Soybean	cytosol	26.78	27.53
KRH21852	Soybean	cytosol, nucleus	26.5	27.32
KRH29977	Soybean	cytosol	26.5	26.5
KRH01239	Soybean	cytosol	27.05	26.19
KRH40859	Soybean	cytosol	25.41	26.05
KRH40858	Soybean	endoplasmic reticulum	25.68	25.47
KRG89137	Soybean	cytosol	25.41	25.14

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.50.150	MapMan:50.2.1	EMBL:ACUP02007146	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G256500
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0008171	GO:GO:0008757	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019438	GO:GO:0032259	GO:GO:0046983	UniProt:I1LN10	InterPro:IPR016461	InterPro:IPR036388
EnsemblPlants:KRH31595	ProteinID:KRH31595	ProteinID:KRH31595.1	InterPro:O-MeTrfase_COMT	InterPro:O_MeTrfase_2	PFAM:PF00891
PFAM:PF08100	PIRSF:PIRSF005739	PFscan:PS51683	PANTHER:PTHR11746	PANTHER:PTHR11746:SF98	InterPro:Plant_MeTrfase_dimerisation
InterPro:SAM-dependent_MTases	SUPFAM:SSF46785	SUPFAM:SSF53335	UniParc:UPI000233D585	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:34622779..34624252

Molecular Weight (calculated)

40552.9 Da

IEP (calculated)

5.181

GRAVY (calculated)

-0.092

Length

366 amino acids

Sequence
(BLAST)

001: MGEIEREEMS STRWEKEEEE EEEEAQMDIW KYIFGFVELA VIKCAIELGI AEAIEKHGSP MTLSEISSSL GCDTSHLKRI MRFLVQRKIF KGDGCSRGYS
101: QSALSRRLMR NGEHSMASFL LLESSPVMLA PWHSLSARVM ANGNPSFAKA HGEDVWRYAA ANLDHSNLIN EAMACDAKLV MPIIIQSCSE AFHGLKSLVD
201: VGGGNGTAMR ILAKACPSIR PINFDLPHVI ALCDGDGDGV QHVSGDMFLS VPKADAAFLM WVLHDWSDEE CIQILKKCRE AISNSKENGR VIIVEAVIEG
301: EGEGEGGKHD GLKDVGLMLD MVMMAHTNFG KERTLKEWEY VIKMAGFSSY TVKPIHAVQS VIMAFY

Best Arabidopsis Sequence Match ( AT4G35160.1 )
(BLAST)

001: MSSDQLSKFL DRNKMEDNKR KVLDEEAKAS LDIWKYVFGF ADIAAAKCAI DLKIPEAIEN HPSSQPVTLA ELSSAVSASP SHLRRIMRFL VHQGIFKEIP
101: TKDGLATGYV NTPLSRRLMI TRRDGKSLAP FVLFETTPEM LAPWLRLSSV VSSPVNGSTP PPFDAVHGKD VWSFAQDNPF LSDMINEAMA CDARRVVPRV
201: AGACHGLFDG VTTMVDVGGG TGETMGMLVK EFPWIKGFNF DLPHVIEVAE VLDGVENVEG DMFDSIPACD AIFIKWVLHD WGDKDCIKIL KNCKEAVPPN
301: IGKVLIVESV IGENKKTMIV DERDEKLEHV RLMLDMVMMA HTSTGKERTL KEWDFVLKEA GFARYEVRDI DDVQSLIIAY RS

Arabidopsis Description

ASMTAcetylserotonin O-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9T003]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.