Factsheet for PGSC0003DMT400047988

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009060
PGSC0003DMT400058139

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35160.1	PGSC0003DMT400009060	AT3G60820.1	21798944
AT4G35160.1	PGSC0003DMT400058139	AT3G60820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047989	Potato	cytosol	87.39	92.58
Solyc01g111900.2.1	Tomato	cytosol	90.48	90.48
PGSC0003DMT400000736	Potato	cytosol	44.82	63.24
VIT_03s0038g03090.t01	Wine grape	cytosol	60.22	60.91
PGSC0003DMT400095923	Potato	cytosol	64.99	58.88
VIT_03s0038g03080.t01	Wine grape	cytosol	58.54	57.1
KRH31595	Soybean	cytoskeleton, cytosol, endoplasmic reticulum	56.3	54.92
CDX72522	Canola	cytosol	44.54	49.69
Bra017700.1-P	Field mustard	cytosol	50.42	49.05
CDY17512	Canola	cytosol	48.18	48.45
CDY67664	Canola	cytosol	43.42	48.44
CDY09082	Canola	cytosol	26.61	47.98
Bra038396.1-P	Field mustard	cytosol	49.02	47.68
Bra034677.1-P	Field mustard	cytosol	48.74	47.28
CDX76316	Canola	cytosol	43.7	47.27
AT4G35150.1	Thale cress	cytosol	42.86	47.08
PGSC0003DMT400020336	Potato	cytosol	31.37	47.06
AT4G35160.1	Thale cress	cytosol	49.86	46.6
CDX72521	Canola	cytosol	42.58	46.48
Bra017699.1-P	Field mustard	cytosol	47.62	46.45
CDY09084	Canola	cytosol	43.98	46.18
CDY17514	Canola	cytosol	43.42	44.41
CDY67665	Canola	cytosol	34.73	44.29
CDY51573	Canola	cytosol	48.74	44.27
Bra034678.1-P	Field mustard	cytosol	33.89	43.06
PGSC0003DMT400045239	Potato	cytosol	28.29	40.08
PGSC0003DMT400051777	Potato	cytosol	15.41	34.38
PGSC0003DMT400001512	Potato	cytosol	33.89	33.33
PGSC0003DMT400038092	Potato	cytosol	32.21	33.05
PGSC0003DMT400029318	Potato	cytosol	32.77	32.23
PGSC0003DMT400034726	Potato	cytosol	31.37	31.2
PGSC0003DMT400070160	Potato	cytosol	30.81	30.47
PGSC0003DMT400051773	Potato	cytosol	29.97	30.06
PGSC0003DMT400051785	Potato	cytosol	30.53	30.03
PGSC0003DMT400051781	Potato	cytosol	30.25	29.92
PGSC0003DMT400022143	Potato	cytosol	28.57	28.25

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102599248	Gene3D:3.40.50.150	MapMan:50.2.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008171
GO:GO:0016740	GO:GO:0032259	GO:GO:0046983	InterPro:IPR016461	InterPro:IPR036388	UniProt:M1BLR3
InterPro:O-MeTrfase_COMT	InterPro:O_MeTrfase_2	PFAM:PF00891	PFAM:PF08100	EnsemblPlantsGene:PGSC0003DMG401018646	PGSC:PGSC0003DMG401018646
EnsemblPlants:PGSC0003DMT400047988	PIRSF:PIRSF005739	PFscan:PS51683	PANTHER:PTHR11746	PANTHER:PTHR11746:SF98	InterPro:Plant_MeTrfase_dimerisation
InterPro:SAM-dependent_MTases	SUPFAM:SSF46785	SUPFAM:SSF53335	UniParc:UPI000295F7C7	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
RefSeq:XP_015159462.1	SEG:seg	:	:	:	:

Description

O-methyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG401018646]

Coordinates

chr1:+:88017279..88018529

Molecular Weight (calculated)

39064.5 Da

IEP (calculated)

6.341

GRAVY (calculated)

0.087

Length

357 amino acids

Sequence
(BLAST)

001: MAKETNGFAR LNHVGEEEVQ ADIWRCISGF TEMAVAKCAI ELGISDFLET HQEPVPLNQL SSALGCSASS LHRILRFLIN RGIFKLVPIE NGEMGYVQTP
101: VSRLLKRDGE NSMAALVLLE SSPVMLAPWQ YLSARVLSNE NTGAFSAAHG KDVWEYAKTN PEHSKLINDA LACHARVTMH AIINNCAEIF KGIESLVDVG
201: GGNGTTLGML VKAFPWINGI NFDLPHVVSV APPCHGVVHV EGDMFHSVPK AQAVFLMSVL HDWGDEECIQ ILKKCIEASP KDTGKVIIVE AVLDEKIDKG
301: KRLKDVGIML DMIMMAHTTN GKERTAKEWA HILSAAGFSR HSILQIPAIE PVILAYP

Best Arabidopsis Sequence Match ( AT4G35160.1 )
(BLAST)

001: MSSDQLSKFL DRNKMEDNKR KVLDEEAKAS LDIWKYVFGF ADIAAAKCAI DLKIPEAIEN HPSSQPVTLA ELSSAVSASP SHLRRIMRFL VHQGIFKEIP
101: TKDGLATGYV NTPLSRRLMI TRRDGKSLAP FVLFETTPEM LAPWLRLSSV VSSPVNGSTP PPFDAVHGKD VWSFAQDNPF LSDMINEAMA CDARRVVPRV
201: AGACHGLFDG VTTMVDVGGG TGETMGMLVK EFPWIKGFNF DLPHVIEVAE VLDGVENVEG DMFDSIPACD AIFIKWVLHD WGDKDCIKIL KNCKEAVPPN
301: IGKVLIVESV IGENKKTMIV DERDEKLEHV RLMLDMVMMA HTSTGKERTL KEWDFVLKEA GFARYEVRDI DDVQSLIIAY RS

Arabidopsis Description

ASMTAcetylserotonin O-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9T003]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.