Factsheet for PGSC0003DMT400095923

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009060
PGSC0003DMT400058139

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35160.1	PGSC0003DMT400009060	AT3G60820.1	21798944
AT4G35160.1	PGSC0003DMT400058139	AT3G60820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000736	Potato	cytosol	59.64	92.89
Solyc12g009110.1.1	Tomato	cytosol	85.53	91.33
PGSC0003DMT400047989	Potato	cytosol	56.6	66.17
PGSC0003DMT400047988	Potato	cytosol	58.88	64.99
VIT_03s0038g03090.t01	Wine grape	cytosol	57.61	64.31
VIT_03s0038g03080.t01	Wine grape	cytosol	53.55	57.65
KRH31595	Soybean	cytoskeleton, cytosol, endoplasmic reticulum	53.05	57.1
CDX72522	Canola	cytosol	40.86	50.31
CDY09082	Canola	cytosol	24.87	49.49
CDX76316	Canola	cytosol	41.12	49.09
CDY67664	Canola	cytosol	39.85	49.06
Bra017700.1-P	Field mustard	cytosol	45.69	49.05
Bra038396.1-P	Field mustard	cytosol	45.43	48.77
AT4G35150.1	Thale cress	cytosol	40.1	48.62
Bra034677.1-P	Field mustard	cytosol	45.18	48.37
CDX72521	Canola	cytosol	39.59	47.71
CDY09084	Canola	cytosol	41.12	47.65
AT4G35160.1	Thale cress	cytosol	46.19	47.64
Bra017699.1-P	Field mustard	cytosol	43.91	47.27
CDY17512	Canola	cytosol	41.88	46.48
CDY17514	Canola	cytosol	41.12	46.42
CDY51573	Canola	cytosol	45.43	45.55
CDY67665	Canola	cytosol	30.2	42.5
PGSC0003DMT400020336	Potato	cytosol	25.63	42.44
Bra034678.1-P	Field mustard	cytosol	29.44	41.28
PGSC0003DMT400045239	Potato	cytosol	23.1	36.11
PGSC0003DMT400051777	Potato	cytosol	13.96	34.38
PGSC0003DMT400001512	Potato	cytosol	30.2	32.78
PGSC0003DMT400038092	Potato	cytosol	27.66	31.32
PGSC0003DMT400051781	Potato	cytosol	28.43	31.02
PGSC0003DMT400051785	Potato	cytosol	28.43	30.85
PGSC0003DMT400051773	Potato	cytosol	27.41	30.34
PGSC0003DMT400029318	Potato	cytosol	27.16	29.48
PGSC0003DMT400034726	Potato	cytosol	26.65	29.25
PGSC0003DMT400070160	Potato	cytosol	26.14	28.53
PGSC0003DMT400022143	Potato	cytosol	25.38	27.7

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.50.150	MapMan:50.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008171	GO:GO:0016740
GO:GO:0032259	GO:GO:0046983	InterPro:IPR016461	InterPro:IPR036388	UniProt:M1DXC0	InterPro:O-MeTrfase_COMT
InterPro:O_MeTrfase_2	PFAM:PF00891	PFAM:PF08100	EnsemblPlantsGene:PGSC0003DMG400045494	PGSC:PGSC0003DMG400045494	EnsemblPlants:PGSC0003DMT400095923
PIRSF:PIRSF005739	PFscan:PS51683	PANTHER:PTHR11746	PANTHER:PTHR11746:SF98	InterPro:Plant_MeTrfase_dimerisation	InterPro:SAM-dependent_MTases
SUPFAM:SSF46785	SUPFAM:SSF53335	UniParc:UPI000294CACF	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

O-methyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400045494]

Coordinates

chr12:+:3423466..3427943

Molecular Weight (calculated)

43969.0 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.116

Length

394 amino acids

Sequence
(BLAST)

001: MEKQTNGKAR TNDEEKIQES HEAQANMWKF VFGFTELAVI KCAIELGIAD FLEKNQEPIS LNQLSVALGC CSSSLYRILR FLINRGIFKE TSTKSGKSGY
101: VQTPLSRLLI KEGENSMAAF LLFESSPVML ASWHNLSARI SSKDNSLSSF EAAHGKDVWK YAEADPKHSN LLNNAMACDA RIAISAIIDD CPEIFKGVNT
201: IVDVGGGDGT TLRLLVEAFP WINGINFDLP HVASVAPHAI GVVHVGDDMF NYVPKADAAF LMWVLHDWSD EECIQILTKC REAIPQDNGK VKILEAIIGE
301: KEENIIRGSN NKKLKDVGLM LDMVMMAHTS NGKERTTKEW AYVLNEAGFN RHTISHINVV QSVIQAYPSR FLPCSETNLK CKLCWFIFKV LKKH

Best Arabidopsis Sequence Match ( AT4G35160.1 )
(BLAST)

001: MSSDQLSKFL DRNKMEDNKR KVLDEEAKAS LDIWKYVFGF ADIAAAKCAI DLKIPEAIEN HPSSQPVTLA ELSSAVSASP SHLRRIMRFL VHQGIFKEIP
101: TKDGLATGYV NTPLSRRLMI TRRDGKSLAP FVLFETTPEM LAPWLRLSSV VSSPVNGSTP PPFDAVHGKD VWSFAQDNPF LSDMINEAMA CDARRVVPRV
201: AGACHGLFDG VTTMVDVGGG TGETMGMLVK EFPWIKGFNF DLPHVIEVAE VLDGVENVEG DMFDSIPACD AIFIKWVLHD WGDKDCIKIL KNCKEAVPPN
301: IGKVLIVESV IGENKKTMIV DERDEKLEHV RLMLDMVMMA HTSTGKERTL KEWDFVLKEA GFARYEVRDI DDVQSLIIAY RS

Arabidopsis Description

ASMTAcetylserotonin O-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9T003]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.