CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92440
KRH07953
KRH16959
KRH34357
KRH53667
KRH54704
KRH63230
KRH64261
KRH69706

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	KRG92440	AT3G22960.1	21798944
AT3G60820.1	KRH34357	AT3G22960.1	21798944
AT3G60820.1	KRH16959	AT3G49580.1	21798944
AT3G60820.1	KRH53667	AT3G49580.1	21798944
AT3G60820.1	KRH64261	AT3G49580.1	21798944
AT3G60820.1	KRH07953	AT5G11980.1	21798944
AT3G60820.1	KRH69706	AT5G11980.1	21798944
AT3G60820.1	KRH16959	AT5G24660.1	21798944
AT3G60820.1	KRH53667	AT5G24660.1	21798944
AT3G60820.1	KRH64261	AT5G24660.1	21798944
AT3G60820.1	KRH54704	AT5G61010.1	21798944
AT3G60820.1	KRH63230	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45659	Soybean	endoplasmic reticulum, nucleus	98.65	98.65
VIT_15s0048g00900.t01	Wine grape	cytosol	94.62	94.62
Solyc02g084920.2.1	Tomato	plastid	92.38	92.38
PGSC0003DMT400009060	Potato	cytosol	91.93	91.93
PGSC0003DMT400058139	Potato	cytosol	89.69	89.69
Bra003428.1-P	Field mustard	cytosol	87.44	87.44
Bra007565.1-P	Field mustard	cytosol	87.44	87.44
Bra014468.1-P	Field mustard	cytosol	87.0	87.0
AT3G60820.1	Thale cress	cytosol	87.0	87.0
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	31.84	86.59
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	56.5	84.0
GSMUA_Achr11P...	Banana	cytosol	81.61	82.35
GSMUA_Achr2P00960_001	Banana	plasma membrane	81.17	81.9
TraesCS5A01G285600.1	Wheat	plastid	80.72	81.45
TraesCS5B01G284800.1	Wheat	cytosol	80.72	81.45
TraesCS5D01G292900.1	Wheat	cytosol	80.72	81.45
Zm00001d006085_P002	Maize	extracellular	80.27	81.0
Zm00001d021051_P002	Maize	mitochondrion	80.27	81.0
Os09t0505600-01	Rice	plastid	80.27	81.0
OQU89746	Sorghum	cytosol	66.82	80.54
EES15319	Sorghum	cytosol	76.68	78.08
Zm00001d031599_P001	Maize	cytosol, extracellular	76.68	78.08
Os08t0529100-01	Rice	cytosol	75.78	77.17
HORVU5Hr1G076130.2	Barley	plastid	80.72	69.77
Zm00001d018456_P001	Maize	cytosol	29.15	60.19
Zm00001d043281_P001	Maize	cytosol	29.15	60.19
GSMUA_AchrUn_...	Banana	extracellular	27.8	59.62
CDY46344	Canola	endoplasmic reticulum	50.67	42.8
KRH17983	Soybean	endoplasmic reticulum	24.22	26.47
KRH16390	Soybean	nucleus	24.22	26.47
KRH53242	Soybean	cytosol	21.08	25.54
KRH64671	Soybean	cytosol	23.32	25.49
KRH58259	Soybean	cytosol	4.04	11.69

Protein Annotations

MapMan:19.2.6.1.2.6	Gene3D:3.60.20.10	EMBL:ACUP02011039	EnsemblPlantsGene:GLYMA_18G138900	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603
InterPro:IPR023333	InterPro:IPR029055	UniProt:K7MS03	EnsemblPlants:KRG99348	ProteinID:KRG99348	ProteinID:KRG99348.1
InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF107
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.986	UniParc:UPI00023DB57D

Description

hypothetical protein

Coordinates

chr18:+:20776568..20779100

Molecular Weight (calculated)

24550.2 Da

IEP (calculated)

6.755

GRAVY (calculated)

-0.196

Length

223 amino acids

Sequence
(BLAST)

001: MTKQQANWSP YDNNGGSCVA IAGADYCVIA ADTRMSTGYN ILTRDYSKIS QLAEKCVMAS SGFQADVKAL QKVLSARHLI YQHQHNKQMS CPAMAQLLSN
101: TLYYKRFFPY YAFNVLGGLD NEGKGCVFTY DAVGSYERVG YSSQGSGSTL IMPFLDNQLK SPSPLLLPAQ DAVTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKVEIVVLNA SGIRREYMDL RKD

Best Arabidopsis Sequence Match ( AT3G60820.3 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.