Factsheet for Os09t0505600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0763750-01
Os07t0181000-01
Os12t0538300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	Os07t0181000-01	AT3G22960.1	21798944
AT3G60820.1	Os12t0538300-01	AT5G11980.1	21798944
AT3G60820.1	Os01t0763750-01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021051_P002	Maize	mitochondrion	96.83	96.83
OQU89746	Sorghum	cytosol	81.0	96.76
Zm00001d006085_P002	Maize	extracellular	95.93	95.93
TraesCS5A01G285600.1	Wheat	plastid	94.12	94.12
TraesCS5B01G284800.1	Wheat	cytosol	94.12	94.12
TraesCS5D01G292900.1	Wheat	cytosol	94.12	94.12
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	34.39	92.68
Os08t0529100-01	Rice	cytosol	85.07	85.84
GSMUA_Achr11P...	Banana	cytosol	84.16	84.16
GSMUA_Achr2P00960_001	Banana	plasma membrane	84.16	84.16
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	55.66	82.0
HORVU5Hr1G076130.2	Barley	plastid	94.12	80.62
VIT_15s0048g00900.t01	Wine grape	cytosol	81.0	80.27
KRG99348	Soybean	nucleus	81.0	80.27
KRH45659	Soybean	endoplasmic reticulum, nucleus	80.54	79.82
Solyc02g084920.2.1	Tomato	plastid	79.19	78.48
PGSC0003DMT400058139	Potato	cytosol	79.19	78.48
PGSC0003DMT400009060	Potato	cytosol	78.73	78.03
CDX89080	Canola	cytosol	77.38	76.68
CDX71344	Canola	cytosol	77.38	76.68
CDY56729	Canola	cytosol	76.92	76.23
Bra014468.1-P	Field mustard	cytosol	76.92	76.23
Bra003428.1-P	Field mustard	cytosol	76.47	75.78
CDY52345	Canola	cytosol	76.47	75.78
CDX71775	Canola	cytosol	76.47	75.78
CDX67842	Canola	cytosol	76.47	75.78
Bra007565.1-P	Field mustard	cytosol	76.47	75.78
AT3G60820.1	Thale cress	cytosol	76.02	75.34
Zm00001d018456_P001	Maize	cytosol	33.03	67.59
Zm00001d043281_P001	Maize	cytosol	33.03	67.59
GSMUA_AchrUn_...	Banana	extracellular	30.32	64.42
CDX95297	Canola	cytosol	32.58	52.55
VIT_01s0146g00300.t01	Wine grape	plastid	44.34	51.04
CDY46344	Canola	endoplasmic reticulum	47.96	40.15
CDY07280	Canola	endoplasmic reticulum, plasma membrane	34.84	37.75
Os06t0643100-01	Rice	plasma membrane	23.98	25.98
Os02t0182500-01	Rice	cytosol	23.53	25.49

Protein Annotations

MapMan:19.2.6.1.2.6	Gene3D:3.60.20.10	EntrezGene:4347507	EMBL:AB014058	EMBL:AC108753	EMBL:AK060884
EMBL:AK103136	ProteinID:BAF25517.1	ProteinID:BAT08852.1	ProteinID:EAZ45289.1	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019774
GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	UniProt:O64464	EnsemblPlantsGene:Os09g0505600
EnsemblPlants:Os09t0505600-01	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF55
InterPro:Proteasome_beta1	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000013259D
RefSeq:XP_015611664.1	:	:	:	:	:

Description

beta-6 subunit of 20 S proteasome, 20 S proteasome beta-6 subunit, 20S proteasome beta6 subunitProteasome subunit beta type 1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit beta-6). (Os09t0505600-01)

Coordinates

chr9:+:19562287..19565726

Molecular Weight (calculated)

24282.9 Da

IEP (calculated)

6.898

GRAVY (calculated)

-0.206

Length

221 amino acids

Sequence
(BLAST)

001: MSRRGDWVYE NNGGTCVAIA GADYCVVAAD TRLSVGYNIL TRDHSKICEL ADKCALASSG FQGDIKALHK NLAARELLYQ HQHNKRMSCP AMAQLLSNTL
101: YYKRFFPYYA FNVLGGLDSE GKGCVFTYDA VGSYERTGYS AQGTGSALIM PVLDNQLKSP SPLLLPARDA VTPLSETEAV DLVKDVFASA TERDIYTGDK
201: LEIVVINKAG TKREYIDLRK D

Best Arabidopsis Sequence Match ( AT3G60820.3 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.