CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX78461
CDX80461
CDX91181
CDX92969
CDX94878
CDY02176
CDY05402
CDY05452
CDY08148
CDY23090
CDY35484
CDY40829
CDY67814
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	CDX92969	AT3G22960.1	21798944
AT3G60820.1	CDX94878	AT3G22960.1	21798944
AT3G60820.1	CDY35484	AT3G22960.1	21798944
AT3G60820.1	CDY40829	AT3G22960.1	21798944
AT3G60820.1	CDY08148	AT3G49580.1	21798944
AT3G60820.1	CDX70438	AT5G11980.1	21798944
AT3G60820.1	CDX78461	AT5G11980.1	21798944
AT3G60820.1	CDX91181	AT5G11980.1	21798944
AT3G60820.1	CDY67814	AT5G11980.1	21798944
AT3G60820.1	CDX80461	AT5G24660.1	21798944
AT3G60820.1	CDY05402	AT5G24660.1	21798944
AT3G60820.1	CDY05452	AT5G24660.1	21798944
AT3G60820.1	CDY69515	AT5G24660.1	21798944
AT3G60820.1	CDY02176	AT5G61010.1	21798944
AT3G60820.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007565.1-P	Field mustard	cytosol	100.0	100.0
CDY52345	Canola	cytosol	100.0	100.0
CDX67842	Canola	cytosol	99.1	99.1
CDY56729	Canola	cytosol	98.65	98.65
CDX89080	Canola	cytosol	97.76	97.76
CDX71344	Canola	cytosol	97.31	97.31
AT3G60820.1	Thale cress	cytosol	95.07	95.07
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	31.39	85.37
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	53.81	80.0
GSMUA_Achr2P00960_001	Banana	plasma membrane	78.48	79.19
GSMUA_Achr11P...	Banana	cytosol	78.48	79.19
Zm00001d006085_P002	Maize	extracellular	76.68	77.38
Zm00001d021051_P002	Maize	mitochondrion	76.68	77.38
OQU89746	Sorghum	cytosol	64.13	77.3
TraesCS5D01G292900.1	Wheat	cytosol	75.78	76.47
TraesCS5B01G284800.1	Wheat	cytosol	75.78	76.47
TraesCS5A01G285600.1	Wheat	plastid	75.78	76.47
Os09t0505600-01	Rice	plastid	75.78	76.47
Os08t0529100-01	Rice	cytosol	74.44	75.8
EES15319	Sorghum	cytosol	73.99	75.34
Zm00001d031599_P001	Maize	cytosol, extracellular	73.09	74.43
CDX95297	Canola	cytosol	40.81	66.42
HORVU5Hr1G076130.2	Barley	plastid	75.78	65.5
Zm00001d018456_P001	Maize	cytosol	28.7	59.26
Zm00001d043281_P001	Maize	cytosol	28.7	59.26
GSMUA_AchrUn_...	Banana	extracellular	26.91	57.69
CDY46344	Canola	endoplasmic reticulum	56.05	47.35
CDY07280	Canola	endoplasmic reticulum, plasma membrane	42.15	46.08
CDX71420	Canola	plastid	21.52	39.02
CDY40889	Canola	mitochondrion	10.76	29.27
CDY08181	Canola	cytosol	24.66	26.96
CDY04667	Canola	cytosol	24.66	26.96
CDY00398	Canola	extracellular	24.66	26.96
CDY01316	Canola	cytosol	24.22	26.21
CDY71260	Canola	cytosol	22.42	26.18
CDY67773	Canola	extracellular	22.42	26.18
CDY38347	Canola	extracellular	22.42	26.18
CDY40893	Canola	mitochondrion	19.28	26.06
CDY70670	Canola	cytosol, mitochondrion	17.49	24.38
CDY08180	Canola	plastid	9.87	9.91

Protein Annotations

MapMan:19.2.6.1.2.6	Gene3D:3.60.20.10	GO:A0A078IMN6	UniProt:A0A078IMN6	EnsemblPlants:CDX71775	ProteinID:CDX71775
ProteinID:CDX71775.1	ProteinID:CDY52345.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00155484001	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF107	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI00025428D4

Description

BnaC08g30990DProteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A078IMN6]

Coordinates

chrLK031795:+:492508..493960

Molecular Weight (calculated)

24585.4 Da

IEP (calculated)

7.026

GRAVY (calculated)

-0.204

Length

223 amino acids

Sequence
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADKAVLSS SGFQADVKAL QKVLKSRHLV YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYEKVG YSAQGSGSTL IMPFLDNQLK SPSPLLLPAQ DAITPLSEPE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIRTEVMEL RKD

Best Arabidopsis Sequence Match ( AT3G60820.3 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.