Factsheet for Zm00001d018456_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006805_P001
Zm00001d018961_P002
Zm00001d028871_P001
Zm00001d034443_P001
Zm00001d043365_P001
Zm00001d053677_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	Zm00001d018961_P002	AT3G22960.1	21798944
AT3G60820.1	Zm00001d034443_P001	AT3G22960.1	21798944
AT3G60820.1	Zm00001d006805_P001	AT5G11980.1	21798944
AT3G60820.1	Zm00001d028871_P001	AT5G11980.1	21798944
AT3G60820.1	Zm00001d053677_P001	AT5G11980.1	21798944
AT3G60820.1	Zm00001d043365_P001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043281_P001	Maize	cytosol	100.0	100.0
OQU89746	Sorghum	cytosol	68.52	40.0
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	50.0	36.0
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	26.85	35.37
Zm00001d021051_P002	Maize	mitochondrion	68.52	33.48
TraesCS5A01G285600.1	Wheat	plastid	67.59	33.03
Os09t0505600-01	Rice	plastid	67.59	33.03
TraesCS5B01G284800.1	Wheat	cytosol	67.59	33.03
TraesCS5D01G292900.1	Wheat	cytosol	67.59	33.03
Zm00001d006085_P002	Maize	extracellular	67.59	33.03
GSMUA_Achr11P...	Banana	cytosol	62.04	30.32
GSMUA_Achr2P00960_001	Banana	plasma membrane	62.04	30.32
PGSC0003DMT400058139	Potato	cytosol	62.04	30.04
KRG99348	Soybean	nucleus	60.19	29.15
Zm00001d031599_P001	Maize	cytosol, extracellular	58.33	28.77
Bra003428.1-P	Field mustard	cytosol	59.26	28.7
VIT_15s0048g00900.t01	Wine grape	cytosol	59.26	28.7
KRH45659	Soybean	endoplasmic reticulum, nucleus	59.26	28.7
CDY56729	Canola	cytosol	59.26	28.7
CDY52345	Canola	cytosol	59.26	28.7
Bra007565.1-P	Field mustard	cytosol	59.26	28.7
CDX67842	Canola	cytosol	59.26	28.7
CDX71775	Canola	cytosol	59.26	28.7
HORVU5Hr1G076130.2	Barley	plastid	67.59	28.29
CDX89080	Canola	cytosol	58.33	28.25
Bra014468.1-P	Field mustard	cytosol	58.33	28.25
CDX71344	Canola	cytosol	58.33	28.25
Solyc02g084920.2.1	Tomato	plastid	58.33	28.25
PGSC0003DMT400009060	Potato	cytosol	58.33	28.25
AT3G60820.1	Thale cress	cytosol	57.41	27.8
VIT_01s0146g00300.t01	Wine grape	plastid	45.37	25.52
Zm00001d036758_P002	Maize	extracellular	17.59	16.52
CDY46344	Canola	endoplasmic reticulum	38.89	15.91
Zm00001d036756_P001	Maize	cytosol	13.89	15.15
CDX95297	Canola	cytosol	18.52	14.6
GSMUA_AchrUn_...	Banana	extracellular	13.89	14.42
Zm00001d046600_P001	Maize	cytosol	29.63	13.91
Zm00001d015526_P002	Maize	cytosol	26.85	13.68
CDY07280	Canola	endoplasmic reticulum, plasma membrane	22.22	11.76

Protein Annotations

EnsemblPlants:Zm00001d018456_P001	EnsemblPlants:Zm00001d018456_T001	EnsemblPlantsGene:Zm00001d018456	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	InterPro:Proteasome_beta1	PANTHER:PTHR11599
PANTHER:PTHR11599:SF55	ProteinID:AQK76049.1	ProteinID:ONM37404.1	SUPFAM:SSF56235	UniParc:UPI000842DC49	UniProt:A0A1D6HP47
MapMan:35.1	:	:	:	:	:

Description

Proteasome subunit beta type-1

Coordinates

chr5:-:221161040..221162181

Molecular Weight (calculated)

12528.0 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.457

Length

108 amino acids

Sequence
(BLAST)

001: MRKQEQEGEK VQGDIKALHK NLAVRELLYQ HQHNKRMSCP AMAQLLSNTL YYKCFFPYYA FNVLGGLDSE EAIDLVKDVF ASEPERDIYT SKYMLFVLPG
101: AVRGYENN

Best Arabidopsis Sequence Match ( AT3G60820.2 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTV
201: NKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.