Factsheet for TraesCS5B01G036100.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54160.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT5G54160.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT5G54160.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G036200.1	Wheat	vacuole	96.01	96.01
TraesCS5D01G488900.1	Wheat	cytosol	68.09	67.71
TraesCS2B01G066100.1	Wheat	cytosol	61.82	60.78
TraesCS3B01G612000.1	Wheat	cytosol	60.97	60.11
TraesCS7B01G245500.1	Wheat	cytosol	60.4	58.89
TraesCS6B01G011100.1	Wheat	cytosol	59.26	57.78
HORVU1Hr1G089620.1	Barley	cytosol	60.11	56.27
TraesCS2B01G065800.1	Wheat	cytosol	17.38	54.46
TraesCS2B01G617300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.42	54.42
CDY18302	Canola	cytosol	29.91	50.97
CDY18304	Canola	cytosol	29.91	50.97
Solyc03g080180.2.1	Tomato	extracellular	51.57	50.7
PGSC0003DMT400001512	Potato	cytosol	52.42	50.69
CDY55338	Canola	cytosol	42.45	50.34
Bra026320.1-P	Field mustard	cytosol	42.45	50.34
KRH53640	Soybean	cytosol	51.28	49.32
KRH64288	Soybean	cytosol, nucleus	51.28	49.32
KRH53639	Soybean	cytosol	51.28	49.18
CDY43839	Canola	cytosol	50.71	48.9
KRH53638	Soybean	mitochondrion	50.71	48.77
AT5G54160.1	Thale cress	cytosol	50.43	48.76
CDY43052	Canola	cytosol	50.43	48.63
CDY18306	Canola	cytosol	50.43	48.63
Bra029041.1-P	Field mustard	cytosol	50.43	48.63
Bra003007.1-P	Field mustard	cytosol	49.86	48.08
CDY14328	Canola	cytosol	49.86	48.08
CDY19037	Canola	cytosol	50.43	47.97
CDY14330	Canola	cytosol	48.72	47.24
Bra019031.1-P	Field mustard	cytosol	49.0	46.87
CDY19039	Canola	cytosol	46.72	46.59
Bra003009.1-P	Field mustard	cytosol	46.44	46.57
KRH64289	Soybean	cytosol	44.16	46.55
CDY29856	Canola	cytosol	48.43	46.32
CDX92835	Canola	cytosol	47.58	45.5
CDY28789	Canola	cytosol	46.15	44.88
Bra022700.1-P	Field mustard	cytosol	46.15	44.88
KRH14071	Soybean	cytosol	25.36	43.2
CDY41780	Canola	cytosol	30.77	42.19
TraesCS3B01G448600.1	Wheat	cytosol	43.87	41.62
TraesCS1B01G040400.1	Wheat	cytosol	26.5	39.41
TraesCS1B01G041100.1	Wheat	cytosol	39.89	38.15
TraesCS6B01G449400.1	Wheat	cytosol	37.04	35.14
VIT_16s0098g00850.t01	Wine grape	cytosol	51.85	24.59

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.50.150	MapMan:50.2.1	InterPro:De-COase2_CS	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008171
GO:GO:0016740	GO:GO:0046983	InterPro:IPR016461	InterPro:IPR036388	InterPro:O-MeTrfase_COMT	InterPro:O_MeTrfase_2
PFAM:PF00891	PFAM:PF08100	PIRSF:PIRSF005739	ScanProsite:PS00879	PFscan:PS51683	PANTHER:PTHR11746
PANTHER:PTHR11746:SF114	InterPro:Plant_MeTrfase_dimerisation	InterPro:SAM-dependent_MTases	SUPFAM:SSF46785	SUPFAM:SSF53335	EnsemblPlantsGene:TraesCS5B01G036100
EnsemblPlants:TraesCS5B01G036100.1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:

Description

No Description!

Coordinates

chr5B:-:39543046..39544447

Molecular Weight (calculated)

38689.2 Da

IEP (calculated)

5.786

GRAVY (calculated)

0.059

Length

351 amino acids

Sequence
(BLAST)

001: MADDREAFMY ALQLSLAAIV PMTLKSVVEL GMLEILVGAG GKMLSPWEVA VQLPSANPCA PAMLDRMLRL MASYNIVSCE VQQGKDGLIT RRYGAAPVCK
101: WLTPDKDGAS LGPLILLNDK ILMETWYHLK DTVLDGGQPF DRAYGMTLFD YQAVDPRFNG VFNEAMKSHS TFIIRNLLQF YRGFDDDAVS TLVDVGGGLG
201: ATLHAITSRY PHIKGVNFDL PHVISQAPSF TGVQHVSGDM FDKVPSGDAI LMKGILHDWT DEHCTKLLRN CYDALPGHGK VVVVDCVMPE KPDDTPEVKT
301: MFKLDILMLM QTPGGKERCL KEFQELARTA GFVSVNATHI CSSAWVVELM K

Best Arabidopsis Sequence Match ( AT1G21100.1 )
(BLAST)

001: MGYLFQETLS SNPKTPIVVD DDNELGLMAV RLANAAAFPM VLKAALELGV FDTLYAAASR TDSFLSPYEI ASKLPTTPRN PEAPVLLDRM LRLLASYSMV
101: KCGKALSGKG ERVYRAEPIC RFFLKDNIQD IGSLASQVIV NFDSVFLNTW AQLKDVVLEG GDAFGRAHGG MKLFDYMGTD ERFSKLFNQT GFTIAVVKKA
201: LEVYEGFKGV KVLVDVGGGV GNTLGVVTSK YPNIKGINFD LTCALAQAPS YPGVEHVAGD MFVDVPTGDA MILKRILHDW TDEDCVKILK NCWKSLPENG
301: KVVVIELVTP DEAENGDINA NIAFDMDMLM FTQCSGGKER SRAEFEALAA ASGFTHCKFV CQAYHCWIIE FCK

Arabidopsis Description

IGMT1Indole glucosinolate O-methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.