Factsheet for TraesCS4A01G322100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G552400.1	Wheat	mitochondrion	94.15	89.89
TraesCS5B01G556400.1	Wheat	mitochondrion	89.14	86.25
TraesCS4A01G000200.1	Wheat	mitochondrion	85.24	86.2
HORVU4Hr1G000580.1	Barley	plasma membrane	81.06	77.19
GSMUA_AchrUn_...	Banana	cytosol	49.3	59.0
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	59.89	58.74
PGSC0003DMT400069221	Potato	cytosol	48.19	56.54
Solyc02g088360.1.1	Tomato	cytosol	20.61	55.22
VIT_04s0023g01410.t01	Wine grape	mitochondrion	9.75	52.24
CDY43841	Canola	mitochondrion	52.09	52.09
Bra029043.1-P	Field mustard	mitochondrion	52.09	51.8
CDY14335	Canola	plastid	50.97	50.27
KRH53657	Soybean	mitochondrion	55.71	49.51
KRH64272	Soybean	mitochondrion	55.15	49.01
Bra022695.1-P	Field mustard	mitochondrion	49.58	48.9
CDX89237	Canola	mitochondrion	52.65	47.85
AT5G54100.1	Thale cress	mitochondrion	53.2	47.63
CDY19053	Canola	mitochondrion	52.65	47.49
PGSC0003DMT400001564	Potato	mitochondrion	55.71	47.17
Solyc03g080050.2.1	Tomato	plastid	55.71	47.17
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	57.66	47.05
AT4G27585.1	Thale cress	mitochondrion	51.81	45.26
CDY46788	Canola	golgi	44.85	45.1
CDY43054	Canola	mitochondrion	52.65	45.0
Bra003016.1-P	Field mustard	cytosol	51.25	44.34
CDY28794	Canola	plastid	49.3	43.81
Bra022696.1-P	Field mustard	plastid	49.3	43.81
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	46.8	42.21
CDY41775	Canola	plastid	42.62	40.48
CDY41774	Canola	mitochondrion	49.58	33.71
CDY28795	Canola	mitochondrion	49.03	32.9

Protein Annotations

EnsemblPlants:TraesCS4A01G322100.1	EnsemblPlantsGene:TraesCS4A01G322100	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	InterPro:Stomatin_fam	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10	PFAM:PF01145
PFAM:PF16200	PRINTS:PR00721	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	TIGR:cd08829
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:610250073..610252980

Molecular Weight (calculated)

38771.6 Da

IEP (calculated)

9.329

GRAVY (calculated)

-0.313

Length

359 amino acids

Sequence
(BLAST)

001: MATATRMLAR RAAPGLLRSA TTPGLLRSAA AATGPNPALA LPALLQTQGG GRRWYRAARG DPSPSFYEPP PTPANLGLSI VPEKKAFVVE RFGKYLKTLS
101: SGIHLLMPGV DQIAYVHSLK EEAIPIPDNS AITKDNVSIQ IGGVLYVKIV DPYMASYGVE NPIYAVIQLA QTTMRSELGK ITLDKTFEER DTLNTNIVKS
201: INEAAETWGL KCLRYEIRDI TPPDGVKKAM EMQAAAERKK RAQILESEGA MMENANKAKG EAEAILARSQ ATAEGIRMVS ESFKTEGSTE TNTMLLPSDA
301: GNPGTMIAQA LQIYNHTYKQ KLTLGSPSPS PSPSRRAEEA DLSLGMPSVS DLGTFQHQK

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.