Factsheet for TraesCS5D01G552400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G322100.1	Wheat	mitochondrion	89.89	94.15
TraesCS5B01G556400.1	Wheat	mitochondrion	90.96	92.18
TraesCS4D01G000200.3	Wheat	mitochondrion	91.22	91.96
HORVU4Hr1G000580.1	Barley	plasma membrane	83.78	83.55
TraesCS7D01G295000.1	Wheat	mitochondrion	61.7	63.39
PGSC0003DMT400069221	Potato	cytosol	50.27	61.76
GSMUA_AchrUn_...	Banana	cytosol	48.67	61.0
CDY43841	Canola	mitochondrion	53.99	56.55
Bra029043.1-P	Field mustard	mitochondrion	53.72	55.96
Solyc02g088360.1.1	Tomato	cytosol	19.68	55.22
CDY14335	Canola	plastid	52.39	54.12
KRH53657	Soybean	mitochondrion	56.91	52.97
Bra022695.1-P	Field mustard	mitochondrion	51.06	52.75
KRH64272	Soybean	mitochondrion	56.38	52.48
VIT_04s0023g01410.t01	Wine grape	mitochondrion	9.31	52.24
CDX89237	Canola	mitochondrion	54.52	51.9
AT5G54100.1	Thale cress	mitochondrion	55.05	51.62
CDY19053	Canola	mitochondrion	54.52	51.51
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	59.31	50.68
PGSC0003DMT400001564	Potato	mitochondrion	56.91	50.47
Solyc03g080050.2.1	Tomato	plastid	56.91	50.47
CDY46788	Canola	golgi	46.54	49.02
Bra003016.1-P	Field mustard	cytosol	53.72	48.67
AT4G27585.1	Thale cress	mitochondrion	53.19	48.66
CDY43054	Canola	mitochondrion	54.26	48.57
CDY28794	Canola	plastid	50.8	47.28
Bra022696.1-P	Field mustard	plastid	50.8	47.28
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	49.2	46.48
CDY41775	Canola	plastid	44.95	44.71
CDY41774	Canola	mitochondrion	51.06	36.36
CDY28795	Canola	mitochondrion	51.06	35.89

Protein Annotations

EnsemblPlants:TraesCS5D01G552400.1	EnsemblPlantsGene:TraesCS5D01G552400	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	InterPro:Stomatin_fam	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10	PFAM:PF01145
PFAM:PF16200	PRINTS:PR00721	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	TIGR:cd08829
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:557824445..557827356

Molecular Weight (calculated)

40552.8 Da

IEP (calculated)

9.461

GRAVY (calculated)

-0.256

Length

376 amino acids

Sequence
(BLAST)

001: MATATRMLAR RAAPGLLRSA TSPGLLRSAA AAATGPSPAL ALPALLQAQG GGRRWYRAAG GDPSPSFYEP PPTPANLGLS IVPEKKAFVV ERFGKYLKTL
101: SSGIHLLMPG VDRIAYVHSL KEEAIPIPDN SAITKDNVSI QIGGVLYVKI VDPYMASYGV ENPIYAVIQL AQTTMRSELG KITLDKTFEE RDTLNTNIVK
201: SINEAAETWG LKCLRYEIRD ITPPDGVKKA MEMQAAAERK KRAQILESEG AMMENANKAK GEAEAILARS QATAEGIRMV SESFKTEGST EAASLRIAEQ
301: YIRAFSELAR TTNTMLLPSD AGNPGTMIAQ ALQIYNHTYK QKLTLGSPSP SKRAEEADLS LGMPSVSDLG TFQHQK

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.