CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41774	Canola	mitochondrion	89.53	90.72
CDY43841	Canola	mitochondrion	49.91	74.37
CDY14335	Canola	plastid	49.16	72.25
PGSC0003DMT400069221	Potato	cytosol	39.81	69.61
CDY28794	Canola	plastid	51.03	67.57
CDY43054	Canola	mitochondrion	52.52	66.9
CDX89237	Canola	mitochondrion	49.35	66.84
CDY41775	Canola	plastid	46.92	66.4
CDY19053	Canola	mitochondrion	49.16	66.08
CDY46788	Canola	golgi	42.8	64.15
GSMUA_AchrUn_...	Banana	cytosol	35.89	64.0
AT5G54100.1	Thale cress	mitochondrion	47.29	63.09
KRH64272	Soybean	mitochondrion	46.54	61.63
KRH53657	Soybean	mitochondrion	46.17	61.14
HORVU0Hr1G021000.1	Barley	plastid	26.17	59.32
VIT_09s0002g01630.t01	Wine grape	mitochondrion	45.79	58.33
Solyc03g080050.2.1	Tomato	plastid	43.36	54.72
PGSC0003DMT400001564	Potato	mitochondrion	43.18	54.48
TraesCS4A01G000200.1	Wheat	mitochondrion	35.89	54.08
TraesCS7B01G187500.1	Wheat	golgi, mitochondrion	36.82	53.83
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	36.64	53.55
TraesCS7D01G295000.1	Wheat	mitochondrion	36.64	53.55
TraesCS4B01G000200.1	Wheat	mitochondrion	35.89	53.04
HORVU6Hr1G021720.1	Barley	mitochondrion	24.11	52.02
TraesCS4D01G000200.3	Wheat	mitochondrion	36.26	52.01
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	38.5	51.76
Os08t0158500-02	Rice	mitochondrion	36.26	51.46
TraesCS5D01G552400.1	Wheat	mitochondrion	35.89	51.06
TraesCS5B01G556400.1	Wheat	mitochondrion	35.33	50.94
HORVU4Hr1G000580.1	Barley	plasma membrane	35.33	50.13
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	41.12	50.0
Zm00001d024540_P001	Maize	mitochondrion	36.45	49.49
TraesCS4A01G322100.1	Wheat	mitochondrion	32.9	49.03
EES13390	Sorghum	mitochondrion	36.07	48.74
Zm00001d049533_P001	Maize	plastid	35.51	47.62
TraesCS1B01G457000.1	Wheat	mitochondrion	26.36	41.59
HORVU7Hr1G088720.8	Barley	extracellular, golgi	14.77	34.35
Os08t0161100-00	Rice	cytosol	14.02	33.94
TraesCS1B01G457600.1	Wheat	mitochondrion	14.95	32.52
TraesCS1B01G458900.2	Wheat	mitochondrion	14.95	32.52
HORVU1Hr1G049770.3	Barley	plastid	9.16	23.22
HORVU2Hr1G107420.2	Barley	plastid	8.22	21.67

Protein Annotations

EnsemblPlants:CDY28795	EnsemblPlantsGene:GSBRNA2T00041446001	Gene3D:3.30.479.30	GO:A0A078GQH8	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	InterPro:Stomatin_fam	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10
PFAM:PF01145	PFAM:PF16200	PRINTS:PR00721	ProteinID:CDY28795	ProteinID:CDY28795.1	SEG:seg
SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0004EDEA8F	UniProt:A0A078GQH8	MapMan:35.2	:

Description

BnaA02g09870DBnaA02g09870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQH8]

Coordinates

chrLK032226:+:292895..296393

Molecular Weight (calculated)

58021.2 Da

IEP (calculated)

5.657

GRAVY (calculated)

-0.342

Length

535 amino acids

Sequence
(BLAST)

001: MNQIIRSRSV ASNAVRSLRQ SPLVSGATAT TTPVRHFSSS PGHAFNRINP PANWGIRIVP EKKACVIERF GKYAKTLESG IHFLVPGVDR IAYVHSLKEE
101: AIPIGNQTAI TKDNVSIQID GVLYVKIVNP HLASYGVENP IYAVVQLAQT TMRSELGKMT LDKTFEERDT LNEKIVEAIN VAAKDWGLEC LRYEIRDIMP
201: PNGVRVAMEM QAEAERKKRA QILESEGERQ AHINIADGKK SSVILESEAA KMDQVNRASG EAEAIIARAK ATARGLAMLS QSLKETGGVE AAGLRVAEQY
301: IHAFGNIAKE GTTMLLPSSA ENPANMIAQA LTMYKSLVPK GGLQETSAVE PLLKRNRRRL FLLFNRSLTE KSLRESMDQK RSFIVSSTAL PIVTCLCFKP
401: NLSLNNMGGC ASKPKESDIL ETSAVTENAV VESKNVESEA VSQEKADEVV AEKKEESAVD GAETQKEAEP AKPAEAEVAK PVEAEPAKPA EAEAAPEAVK
501: TEATVKAVDE TEPPKQEEAA PASDSKTTEE PLVTL

Best Arabidopsis Sequence Match ( AT5G54095.2 )
(BLAST)

001: MGGCASKPKE SDIPETEKTV VESKNVETET VSQEKADEVV TEKKEESAGD VAETPKEAEA AKPAEAEAAK PAEAEVAKPA EAEAAPEVVK TEEAVVETVK
101: ETEPPKQEEA VVAANYTKTN EEPLVTL

Arabidopsis Description

At5g54095 [Source:UniProtKB/TrEMBL;Acc:Q681J0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.