Factsheet for VIT_09s0002g01630.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069221	Potato	cytosol	57.38	78.76
CDY43841	Canola	mitochondrion	61.43	71.87
KRH64272	Soybean	mitochondrion	67.62	70.3
Bra029043.1-P	Field mustard	mitochondrion	60.0	69.81
KRH53657	Soybean	mitochondrion	66.67	69.31
CDY14335	Canola	plastid	59.29	68.41
CDX89237	Canola	mitochondrion	64.05	68.1
CDY19053	Canola	mitochondrion	64.29	67.84
Solyc03g080050.2.1	Tomato	plastid	67.62	66.98
PGSC0003DMT400001564	Potato	mitochondrion	67.14	66.51
Bra022695.1-P	Field mustard	mitochondrion	56.43	65.11
CDY46788	Canola	golgi	55.0	64.71
AT5G54100.1	Thale cress	mitochondrion	60.95	63.84
AT4G27585.1	Thale cress	mitochondrion	62.14	63.5
Bra003016.1-P	Field mustard	cytosol	60.24	60.96
CDY43054	Canola	mitochondrion	60.95	60.95
CDY28794	Canola	plastid	56.9	59.16
Bra022696.1-P	Field mustard	plastid	56.9	59.16
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	55.71	58.79
VIT_04s0023g01410.t01	Wine grape	mitochondrion	9.29	58.21
CDY41775	Canola	plastid	51.19	56.88
CDY41774	Canola	mitochondrion	57.86	46.02
CDY28795	Canola	mitochondrion	58.33	45.79

Protein Annotations

EntrezGene:100266977	wikigene:100266977	Gene3D:3.30.479.30	MapMan:35.2	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
InterPro:Band_7_C	ProteinID:CBI35902	ProteinID:CBI35902.3	UniProt:D7TZV6	EMBL:FN596494	GO:GO:0005575
GO:GO:0016020	EntrezGene:LOC100266977	wikigene:LOC100266977	PFAM:PF01145	PFAM:PF16200	PRINTS:PR00721
PANTHER:PTHR43327	PANTHER:PTHR43327:SF10	SMART:SM00244	SUPFAM:SSF117892	InterPro:Stomatin_fam	TIGR:TC57826
TIGR:TC61861	TIGR:TC69430	UniParc:UPI00015C876C	ArrayExpress:VIT_09s0002g01630	EnsemblPlantsGene:VIT_09s0002g01630	EnsemblPlants:VIT_09s0002g01630.t01
unigene:Vvi.9503	RefSeq:XP_002276800	RefSeq:XP_002276800.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:1468020..1474692

Molecular Weight (calculated)

45672.9 Da

IEP (calculated)

9.510

GRAVY (calculated)

-0.302

Length

420 amino acids

Sequence
(BLAST)

001: MNLCRAGRSS LNALRASKLV SPHRPISPLL LRHSHVLPPP FAAAAVRHLR TGREPPVSYE IQPPVNWGVR IVPEKKAYII ERFGKYVKTL ESGIHLLIPL
101: VDRIAYVHSL KEEAIPIPDQ SAITKDNVSI LIDGVLYVKI VDPKLASYGV ENPIYAVIQL AQTTMRSELG KITLDKTFEE RDTLNEKIVL AINEAAKDWG
201: LKCLRYEIRD ISPPRGVRAA MEMQAEAERK KRAQILESEG ERQANINIAD GNKSSVILES EAAKMDQVNR AQGEAEAILA RSQATARGIE MVSRALKESG
301: GVEAASLRIA EQYIQAFSMI AKEGTTMLLP STASNPANMI GQALTIYKSL VGNVNGDALS KDSHPGSLGN IKGDTSSGET GARSPATPRG SDAAPQTREK
401: ADTARFGGPE FSLQSSRKVE

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.