Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 3
- golgi 4
- mitochondrion 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14335 | Canola | plastid | 78.71 | 77.2 |
| CDY43841 | Canola | mitochondrion | 76.47 | 76.04 |
| Bra003016.1-P | Field mustard | cytosol | 77.59 | 66.75 |
| PGSC0003DMT400069221 | Potato | cytosol | 57.14 | 66.67 |
| CDY43054 | Canola | mitochondrion | 75.91 | 64.52 |
| CDX89237 | Canola | mitochondrion | 66.67 | 60.25 |
| CDY19053 | Canola | mitochondrion | 66.95 | 60.05 |
| GSMUA_AchrUn_... | Banana | cytosol | 50.42 | 60.0 |
| AT5G54100.1 | Thale cress | mitochondrion | 65.27 | 58.1 |
| CDY28794 | Canola | plastid | 65.27 | 57.67 |
| KRH64272 | Soybean | mitochondrion | 63.31 | 55.94 |
| KRH53657 | Soybean | mitochondrion | 63.31 | 55.94 |
| CDY41775 | Canola | plastid | 58.82 | 55.56 |
| VIT_09s0002g01630.t01 | Wine grape | mitochondrion | 64.71 | 55.0 |
| HORVU0Hr1G021000.1 | Barley | plastid | 35.85 | 54.24 |
| Solyc03g080050.2.1 | Tomato | plastid | 59.94 | 50.47 |
| PGSC0003DMT400001564 | Potato | mitochondrion | 59.94 | 50.47 |
| TraesCS7D01G295000.1 | Wheat | mitochondrion | 50.98 | 49.73 |
| TraesCS7B01G187500.1 | Wheat | golgi, mitochondrion | 50.98 | 49.73 |
| TraesCS7A01G299700.1 | Wheat | mitochondrion, plastid | 50.7 | 49.45 |
| Solyc06g073030.1.1 | Tomato | endoplasmic reticulum, extracellular | 54.9 | 49.25 |
| TraesCS4A01G000200.1 | Wheat | mitochondrion | 48.46 | 48.73 |
| GSMUA_Achr7P04660_001 | Banana | golgi, mitochondrion | 59.66 | 48.41 |
| HORVU6Hr1G021720.1 | Barley | mitochondrion | 33.33 | 47.98 |
| TraesCS4B01G000200.1 | Wheat | mitochondrion | 48.46 | 47.79 |
| TraesCS5B01G556400.1 | Wheat | mitochondrion | 49.3 | 47.44 |
| Os08t0158500-02 | Rice | mitochondrion | 49.86 | 47.21 |
| HORVU4Hr1G000580.1 | Barley | plasma membrane | 49.58 | 46.95 |
| TraesCS4D01G000200.3 | Wheat | mitochondrion | 49.02 | 46.92 |
| TraesCS5D01G552400.1 | Wheat | mitochondrion | 49.02 | 46.54 |
| CDY41774 | Canola | mitochondrion | 68.35 | 46.21 |
| TraesCS4A01G322100.1 | Wheat | mitochondrion | 45.1 | 44.85 |
| Zm00001d024540_P001 | Maize | mitochondrion | 49.02 | 44.42 |
| EES13390 | Sorghum | mitochondrion | 49.02 | 44.19 |
| Zm00001d049533_P001 | Maize | plastid | 48.46 | 43.36 |
| CDY28795 | Canola | mitochondrion | 64.15 | 42.8 |
| TraesCS1B01G457000.1 | Wheat | mitochondrion | 34.45 | 36.28 |
| HORVU7Hr1G088720.8 | Barley | extracellular, golgi | 23.25 | 36.09 |
| Os08t0161100-00 | Rice | cytosol | 19.05 | 30.77 |
| TraesCS1B01G458900.2 | Wheat | mitochondrion | 20.73 | 30.08 |
| TraesCS1B01G457600.1 | Wheat | mitochondrion | 20.73 | 30.08 |
| HORVU1Hr1G049770.3 | Barley | plastid | 8.96 | 15.17 |
| HORVU2Hr1G107420.2 | Barley | plastid | 7.28 | 12.81 |
Protein Annotations
| EnsemblPlants:CDY46788 | EnsemblPlantsGene:GSBRNA2T00086217001 | Gene3D:3.30.479.30 | GO:A0A078IC23 | GO:GO:0005575 | GO:GO:0016020 |
| InterPro:Band_7 | InterPro:Band_7/SPFH_dom_sf | InterPro:Band_7_C | InterPro:Stomatin_fam | PANTHER:PTHR43327 | PANTHER:PTHR43327:SF10 |
| PFAM:PF01145 | PFAM:PF16200 | PRINTS:PR00721 | ProteinID:CDY46788 | ProteinID:CDY46788.1 | SEG:seg |
| SMART:SM00244 | SUPFAM:SSF117892 | UniParc:UPI0004EED500 | UniProt:A0A078IC23 | MapMan:35.2 | : |
Description
BnaCnng14570DBnaCnng14570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC23]
Coordinates
chrLK032685:+:166643..180716
Molecular Weight (calculated)
39454.5 Da
IEP (calculated)
8.559
GRAVY (calculated)
-0.246
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MIYRNKSTIY IFALTVWWCW KWRCGYVFGE EGKCRDRVKF VRDKAKEVMV ANKNLRVQYP GGTRVEKHDS HLLDDRALES GLPSLVPGVD RIAYVHSLKE
101: EAIPIGNQTA ITKDNVSIHI DGVLYVKIVN PHLASYGVEN PIYAVMQLAQ TTMRSELGKI TLDKTFEERD TLNEKIVAAI NVAAKDWGLE CLRYEIRDIM
201: PPNGVRVAME MQAEAERRKR AQILESEGER QAHINIADGK KSSVILESEA AKINQVNRAS GEAEAIIARA QATARGLTML SQSLNETGGV EAASMRIAEQ
301: YIQAFGNIAK EGTTMLLPSS AANPANMIAQ ALTMYKSLVP NGGIQETSAV VSSSKAK
101: EAIPIGNQTA ITKDNVSIHI DGVLYVKIVN PHLASYGVEN PIYAVMQLAQ TTMRSELGKI TLDKTFEERD TLNEKIVAAI NVAAKDWGLE CLRYEIRDIM
201: PPNGVRVAME MQAEAERRKR AQILESEGER QAHINIADGK KSSVILESEA AKINQVNRAS GEAEAIIARA QATARGLTML SQSLNETGGV EAASMRIAEQ
301: YIQAFGNIAK EGTTMLLPSS AANPANMIAQ ALTMYKSLVP NGGIQETSAV VSSSKAK
001: MTDEERHRRH LSASNVSQVY IGGVESVLHV FRDCPAQLGI WVRFVPRRRQ QGFFSKSLFE WLYDNLCDRS SCEDIPWSTI FAVIIWWGWK WRCSNIFGEN
101: TKCRDRVKFV KEWVVEVYRA HLGNALVGST QPRVERLIGW VLPCVGWVKV NTDGASRGNP GLASAGGVLR DCEGAWCGGF SLNIGRCSAQ HAELWGVYYG
201: LYFAWEKKVP RVELEVDSEA IVGFLKTGIS DSHPLSFLVR LCHNFLQKDW RILLGLLN
101: TKCRDRVKFV KEWVVEVYRA HLGNALVGST QPRVERLIGW VLPCVGWVKV NTDGASRGNP GLASAGGVLR DCEGAWCGGF SLNIGRCSAQ HAELWGVYYG
201: LYFAWEKKVP RVELEVDSEA IVGFLKTGIS DSHPLSFLVR LCHNFLQKDW RILLGLLN
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K355]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.