Factsheet for TraesCS4D01G000200.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G000200.1	Wheat	mitochondrion	91.69	94.48
TraesCS4A01G000200.1	Wheat	mitochondrion	89.81	94.37
TraesCS5D01G552400.1	Wheat	mitochondrion	91.96	91.22
HORVU4Hr1G000580.1	Barley	plasma membrane	81.77	80.9
TraesCS7D01G295000.1	Wheat	mitochondrion	61.93	63.11
PGSC0003DMT400069221	Potato	cytosol	50.94	62.09
GSMUA_AchrUn_...	Banana	cytosol	49.6	61.67
Solyc02g088360.1.1	Tomato	cytosol	20.38	56.72
CDY43841	Canola	mitochondrion	54.16	56.27
Bra029043.1-P	Field mustard	mitochondrion	54.16	55.96
CDY14335	Canola	plastid	52.81	54.12
KRH53657	Soybean	mitochondrion	57.37	52.97
KRH64272	Soybean	mitochondrion	56.84	52.48
VIT_04s0023g01410.t01	Wine grape	mitochondrion	9.38	52.24
Bra022695.1-P	Field mustard	mitochondrion	50.94	52.2
CDX89237	Canola	mitochondrion	55.23	52.15
AT5G54100.1	Thale cress	mitochondrion	55.76	51.87
CDY19053	Canola	mitochondrion	55.23	51.76
PGSC0003DMT400001564	Potato	mitochondrion	57.37	50.47
Solyc03g080050.2.1	Tomato	plastid	57.37	50.47
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	58.98	50.0
CDY46788	Canola	golgi	46.92	49.02
Bra003016.1-P	Field mustard	cytosol	54.42	48.92
CDY43054	Canola	mitochondrion	54.69	48.57
AT4G27585.1	Thale cress	mitochondrion	53.35	48.42
CDY28794	Canola	plastid	50.67	46.78
Bra022696.1-P	Field mustard	plastid	50.67	46.78
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	49.6	46.48
CDY41775	Canola	plastid	44.5	43.92
CDY41774	Canola	mitochondrion	51.47	36.36
CDY28795	Canola	mitochondrion	52.01	36.26

Protein Annotations

EnsemblPlants:TraesCS4D01G000200.3	EnsemblPlantsGene:TraesCS4D01G000200	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	InterPro:Stomatin_fam	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10	PFAM:PF01145
PFAM:PF16200	PRINTS:PR00721	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	TIGR:cd08829
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:459805..463070

Molecular Weight (calculated)

40462.8 Da

IEP (calculated)

9.081

GRAVY (calculated)

-0.213

Length

373 amino acids

Sequence
(BLAST)

001: MSMAATRMLA RRAAPGLLRS ATSPGLLRSG ALPAVLQAQG RWYRAAGGDP SPSFYEPPPT PANLGLSIVP EKKAFVVERF GKYLKTLSSG IHVLMPGVDR
101: IAYVHSLKEE AIPIPDNSAI TKDNVSIQIG GVLYVKIVDP YMASYGVENP IYAVIQLAQT TMRSELGKIT LDKTFEERDT LNTNIVKSIN EAAETWGLKC
201: LRYEIRDITP PDGVKKAMEM QAAAERKKRA QILESEGFVL FSSLVPGAMM ENANKAKGEA EAILARSQAT AEGIRMVSES FKTEGSTEAA SLRIAEQYIR
301: AFSELARSTN TMLLPSDAGN PGTMIAQALQ IYNHTYKQKL TLGSPGPSKR AEEADLSLGM PSVSDLGTFE HHK

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.