Factsheet for TraesCS4A01G000200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G000200.1	Wheat	mitochondrion	100.0	98.07
TraesCS4D01G000200.3	Wheat	mitochondrion	94.37	89.81
TraesCS4A01G322100.1	Wheat	mitochondrion	86.2	85.24
HORVU4Hr1G000580.1	Barley	plasma membrane	85.92	80.9
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	65.35	63.39
PGSC0003DMT400069221	Potato	cytosol	53.52	62.09
GSMUA_AchrUn_...	Banana	cytosol	51.55	61.0
CDY43841	Canola	mitochondrion	55.49	54.87
Bra029043.1-P	Field mustard	mitochondrion	55.49	54.57
Solyc02g088360.1.1	Tomato	cytosol	20.56	54.48
CDY14335	Canola	plastid	54.65	53.3
VIT_04s0023g01410.t01	Wine grape	mitochondrion	9.86	52.24
KRH53657	Soybean	mitochondrion	59.15	51.98
CDX89237	Canola	mitochondrion	57.75	51.9
KRH64272	Soybean	mitochondrion	58.87	51.73
Bra022695.1-P	Field mustard	mitochondrion	52.96	51.65
CDY19053	Canola	mitochondrion	57.46	51.26
AT5G54100.1	Thale cress	mitochondrion	57.75	51.12
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	61.69	49.77
PGSC0003DMT400001564	Potato	mitochondrion	58.87	49.29
Solyc03g080050.2.1	Tomato	plastid	58.87	49.29
CDY46788	Canola	golgi	48.73	48.46
AT4G27585.1	Thale cress	mitochondrion	55.77	48.18
Bra003016.1-P	Field mustard	cytosol	55.77	47.71
CDY43054	Canola	mitochondrion	56.06	47.38
CDY28794	Canola	plastid	53.52	47.03
Bra022696.1-P	Field mustard	plastid	53.52	47.03
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	51.55	45.98
CDY41775	Canola	plastid	46.48	43.65
CDY41774	Canola	mitochondrion	53.8	36.17
CDY28795	Canola	mitochondrion	54.08	35.89

Protein Annotations

EnsemblPlants:TraesCS4A01G000200.1	EnsemblPlantsGene:TraesCS4A01G000200	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	InterPro:Stomatin_fam	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10	PFAM:PF01145
PFAM:PF16200	PRINTS:PR00721	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	TIGR:cd08829
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:189613..192502

Molecular Weight (calculated)

38566.3 Da

IEP (calculated)

7.694

GRAVY (calculated)

-0.286

Length

355 amino acids

Sequence
(BLAST)

001: MLARRAAPGL LRSAASPGLA LPAVLQAQGR WYRAAGGDPS PSFYEPPPTP ANLGLSIVPE KKAFVVERFG KYLKTLSSGI HLLMPGVDRI AYVHSLKEEA
101: IPIPDNSAIT KDNVSIQIGG VLYVKIVDPY MASYGVENPV YAVIQLAQTT MRSELGKITL DKTFEERDTL NTNIVKSINE AAETWGLKCL RYEIRDITPP
201: DGVKKAMEMQ AAAERKKRAQ ILESEGAMME NANKAKGEAE AILARSQATA EGIRMVSESF KTEGSTEAAS LRIAEQYIRA FSELARSTNT MLLPSDAGNP
301: GTMIAQALQI YNHTYKQKLT LGSPSPSPSK RAEEEADLSL GMPSVSDLGT FEHHK

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.