CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022695.1-P	Field mustard	mitochondrion	63.83	92.58
CDY28795	Canola	mitochondrion	90.72	89.53
CDY14335	Canola	plastid	54.36	78.85
CDY43841	Canola	mitochondrion	51.14	75.21
PGSC0003DMT400069221	Potato	cytosol	40.72	70.26
CDY43054	Canola	mitochondrion	55.87	70.24
CDX89237	Canola	mitochondrion	51.7	69.11
CDY19053	Canola	mitochondrion	51.7	68.59
CDY28794	Canola	plastid	52.46	68.56
CDY46788	Canola	golgi	46.21	68.35
CDY41775	Canola	plastid	48.3	67.46
GSMUA_AchrUn_...	Banana	cytosol	35.98	63.33
AT5G54100.1	Thale cress	mitochondrion	47.16	62.09
KRH64272	Soybean	mitochondrion	47.16	61.63
KRH53657	Soybean	mitochondrion	46.59	60.89
HORVU0Hr1G021000.1	Barley	plastid	26.14	58.47
VIT_09s0002g01630.t01	Wine grape	mitochondrion	46.02	57.86
TraesCS7B01G187500.1	Wheat	golgi, mitochondrion	37.5	54.1
PGSC0003DMT400001564	Potato	mitochondrion	43.37	54.01
Solyc03g080050.2.1	Tomato	plastid	43.37	54.01
TraesCS7D01G295000.1	Wheat	mitochondrion	37.31	53.83
TraesCS4A01G000200.1	Wheat	mitochondrion	36.17	53.8
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	37.12	53.55
TraesCS4B01G000200.1	Wheat	mitochondrion	36.17	52.76
Os08t0158500-02	Rice	mitochondrion	37.31	52.25
HORVU6Hr1G021720.1	Barley	mitochondrion	24.24	51.61
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	38.83	51.51
TraesCS4D01G000200.3	Wheat	mitochondrion	36.36	51.47
TraesCS5B01G556400.1	Wheat	mitochondrion	35.98	51.21
TraesCS5D01G552400.1	Wheat	mitochondrion	36.36	51.06
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	41.86	50.23
HORVU4Hr1G000580.1	Barley	plasma membrane	35.61	49.87
TraesCS4A01G322100.1	Wheat	mitochondrion	33.71	49.58
Zm00001d024540_P001	Maize	mitochondrion	36.55	48.98
EES13390	Sorghum	mitochondrion	36.36	48.48
Zm00001d049533_P001	Maize	plastid	35.61	47.12
TraesCS1B01G457000.1	Wheat	mitochondrion	25.57	39.82
HORVU7Hr1G088720.8	Barley	extracellular, golgi	14.77	33.91
Os08t0161100-00	Rice	cytosol	13.83	33.03
TraesCS1B01G458900.2	Wheat	mitochondrion	14.96	32.11
TraesCS1B01G457600.1	Wheat	mitochondrion	14.96	32.11
HORVU1Hr1G049770.3	Barley	plastid	9.66	24.17
HORVU2Hr1G107420.2	Barley	plastid	8.52	22.17

Protein Annotations

EnsemblPlants:CDY41774	EnsemblPlantsGene:GSBRNA2T00073646001	Gene3D:3.30.479.30	GO:A0A078HWK2	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	InterPro:Stomatin_fam	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10
PFAM:PF01145	PFAM:PF16200	PRINTS:PR00721	ProteinID:CDY41774	ProteinID:CDY41774.1	SEG:seg
SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0004EE55C9	UniProt:A0A078HWK2	MapMan:35.2	:

Description

BnaC02g13820DBnaC02g13820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWK2]

Coordinates

chrLK032506:-:16683..20274

Molecular Weight (calculated)

57174.2 Da

IEP (calculated)

5.632

GRAVY (calculated)

-0.356

Length

528 amino acids

Sequence
(BLAST)

001: MNQIIRSRSV ANNAVRSLRQ SPLVSGATAT TTPVRHFSSS PGHAFNSYRI NPPANWGIRI VPEKKACVIE RFGKYAKTLE SGIHFLVPGV DRIAYVHSLK
101: EEAIPIGNQT AITKDNVSIH IDGVLYVKIV NPHLASYGVE NPIYAVVQLA QTTMRSELGK MTLDKTFEER DTLNEKIVEA INVAAKDWGL ECLRYEIRDI
201: MPPNGVRVAM EMQAEAERKK RAQILESEGE RQAHINIADG KKSSVILESE AAKMDQVNRA SGEAEAIIAR AKATARGLAM LSQSLKETGG VEAAGLRVAE
301: QYIHAFGNIA KEGTTMLLPS SAENPANMIA QALTMYKNLV PKGGLQETSA VEPLLKRNRS LTEKSLRESM DQKRSFIVSS TALPIVTCLC FKPNLSLNNM
401: GGCASKPKES DILETSAVTE NAVVESKNVE SEAVSQEKAD EVLAEKKEVS AVDGAETQKE AEPAKPAEAE VAKPVEAEPA KPAEAEAAPE AVKTEATVKA
501: VDETEPPKQE EAAPANDTKT KEETLVTL

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.