Factsheet for HORVU4Hr1G000580.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G000200.1	Wheat	mitochondrion	80.9	85.92
TraesCS4B01G000200.1	Wheat	mitochondrion	80.9	84.25
TraesCS5D01G552400.1	Wheat	mitochondrion	83.55	83.78
TraesCS5B01G556400.1	Wheat	mitochondrion	81.7	83.02
TraesCS4D01G000200.3	Wheat	mitochondrion	80.9	81.77
TraesCS4A01G322100.1	Wheat	mitochondrion	77.19	81.06
HORVU6Hr1G021720.1	Barley	mitochondrion	46.15	70.16
HORVU0Hr1G021000.1	Barley	plastid	42.18	67.37
PGSC0003DMT400069221	Potato	cytosol	50.4	62.09
GSMUA_AchrUn_...	Banana	cytosol	48.54	61.0
CDY43841	Canola	mitochondrion	53.32	55.99
Solyc02g088360.1.1	Tomato	cytosol	19.63	55.22
Bra029043.1-P	Field mustard	mitochondrion	52.79	55.12
CDY14335	Canola	plastid	52.52	54.4
KRH53657	Soybean	mitochondrion	56.76	52.97
KRH64272	Soybean	mitochondrion	56.5	52.72
CDX89237	Canola	mitochondrion	54.91	52.41
VIT_04s0023g01410.t01	Wine grape	mitochondrion	9.28	52.24
CDY19053	Canola	mitochondrion	54.64	51.76
PGSC0003DMT400001564	Potato	mitochondrion	57.82	51.42
Bra022695.1-P	Field mustard	mitochondrion	49.6	51.37
Solyc03g080050.2.1	Tomato	plastid	57.56	51.18
AT5G54100.1	Thale cress	mitochondrion	54.38	51.12
CDY46788	Canola	golgi	46.95	49.58
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	57.56	49.32
AT4G27585.1	Thale cress	mitochondrion	53.58	49.15
Bra003016.1-P	Field mustard	cytosol	53.05	48.19
CDY43054	Canola	mitochondrion	53.32	47.86
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	50.4	47.74
CDY28794	Canola	plastid	49.87	46.53
Bra022696.1-P	Field mustard	plastid	49.87	46.53
HORVU7Hr1G088720.8	Barley	extracellular, golgi	26.79	43.91
CDY41775	Canola	plastid	43.5	43.39
CDY41774	Canola	mitochondrion	49.87	35.61
CDY28795	Canola	mitochondrion	50.13	35.33
HORVU1Hr1G049770.3	Barley	plastid	18.57	33.18
HORVU2Hr1G107420.2	Barley	plastid	16.98	31.53

Protein Annotations

EnsemblPlants:HORVU4Hr1G000580.1	EnsemblPlantsGene:HORVU4Hr1G000580	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	InterPro:Stomatin_fam	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10	PFAM:PF01145
PFAM:PF16200	PRINTS:PR00721	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000B4888EB
UniProt:A0A287MVZ0	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:1086114..1089478

Molecular Weight (calculated)

41139.8 Da

IEP (calculated)

9.587

GRAVY (calculated)

-0.242

Length

377 amino acids

Sequence
(BLAST)

001: NNKINFLFLS TRIDSTPMAM STATRMLARR AVPGHLLRNA NPAAATAALL QRRLYRGGAD PAPSLYHPPP TPANLGLSIV PEKKAFVVER FGKYLKTLPS
101: GIHLLMPGVD RIAYVHSLKE EAIPIPDNSA ITKDNVSIQI GGVLYVKIVD PYMASYGVEN PIYAVIQLAQ TTMRSELGKI TLDKTFEERD TLNLNIVKSI
201: NEAAETWGLK CLRYEIRDIT PPDGVKKAME MQAAAERKKR AQILESEGAM MEKANRAKGE AEAILARSQA TAEGIRMVSE SFKTEGSTEA ASLRIAEQYI
301: RAFSELARTT NTMLLPSDAG NPGTMIAQAL QIYNHTYKQK LTLGSPSPSK QAVAAEEADL SLGMPSVSDL GTFPHQK

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.