CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53657	Soybean	mitochondrion	96.29	96.29
PGSC0003DMT400069221	Potato	cytosol	58.66	77.45
CDY43841	Canola	mitochondrion	63.61	71.59
Bra029043.1-P	Field mustard	mitochondrion	63.12	70.64
CDX89237	Canola	mitochondrion	68.32	69.87
CDY19053	Canola	mitochondrion	68.56	69.6
CDY14335	Canola	plastid	62.13	68.96
GSMUA_AchrUn_...	Banana	cytosol	50.99	68.67
Bra022695.1-P	Field mustard	mitochondrion	61.14	67.86
VIT_09s0002g01630.t01	Wine grape	mitochondrion	70.3	67.62
HORVU0Hr1G021000.1	Barley	plastid	39.36	67.37
AT4G27585.1	Thale cress	mitochondrion	68.07	66.91
PGSC0003DMT400001564	Potato	mitochondrion	68.32	65.09
Solyc03g080050.2.1	Tomato	plastid	67.82	64.62
AT5G54100.1	Thale cress	mitochondrion	62.87	63.34
CDY46788	Canola	golgi	55.94	63.31
CDY43054	Canola	mitochondrion	64.11	61.67
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	54.7	60.38
TraesCS7D01G295000.1	Wheat	mitochondrion	54.7	60.38
Bra003016.1-P	Field mustard	cytosol	61.63	60.0
TraesCS7B01G187500.1	Wheat	golgi, mitochondrion	53.96	59.56
Os08t0158500-02	Rice	mitochondrion	55.2	59.15
TraesCS4A01G000200.1	Wheat	mitochondrion	51.73	58.87
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	57.92	58.79
CDY28794	Canola	plastid	58.42	58.42
Bra022696.1-P	Field mustard	plastid	58.42	58.42
TraesCS4B01G000200.1	Wheat	mitochondrion	51.73	57.73
HORVU6Hr1G021720.1	Barley	mitochondrion	35.4	57.66
TraesCS4D01G000200.3	Wheat	mitochondrion	52.48	56.84
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	61.88	56.82
CDY41775	Canola	plastid	52.97	56.61
TraesCS5B01G556400.1	Wheat	mitochondrion	51.98	56.6
HORVU4Hr1G000580.1	Barley	plasma membrane	52.72	56.5
TraesCS5D01G552400.1	Wheat	mitochondrion	52.48	56.38
EES13390	Sorghum	mitochondrion	54.21	55.3
TraesCS4A01G322100.1	Wheat	mitochondrion	49.01	55.15
Zm00001d024540_P001	Maize	mitochondrion	53.47	54.82
Zm00001d049533_P001	Maize	plastid	52.72	53.38
CDY41774	Canola	mitochondrion	61.63	47.16
CDY28795	Canola	mitochondrion	61.63	46.54
TraesCS1B01G457000.1	Wheat	mitochondrion	36.88	43.95
HORVU7Hr1G088720.8	Barley	extracellular, golgi	23.27	40.87
TraesCS1B01G458900.2	Wheat	mitochondrion	22.52	36.99
TraesCS1B01G457600.1	Wheat	mitochondrion	22.52	36.99
Os08t0161100-00	Rice	cytosol	19.06	34.84
HORVU1Hr1G049770.3	Barley	plastid	12.62	24.17
HORVU2Hr1G107420.2	Barley	plastid	11.63	23.15

Protein Annotations

EMBL:ACUP02002750	EnsemblPlants:KRH64272	EnsemblPlantsGene:GLYMA_04G226400	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	InterPro:Stomatin_fam	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10
PFAM:PF01145	PFAM:PF16200	PRINTS:PR00721	ProteinID:KRH64272	ProteinID:KRH64272.1	SEG:seg
SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0002339C4C	UniProt:I1JYF7	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr4:+:49605208..49609566

Molecular Weight (calculated)

43928.6 Da

IEP (calculated)

9.596

GRAVY (calculated)

-0.308

Length

404 amino acids

Sequence
(BLAST)

001: MATIWKTNAS RNAVRCLTQS LASTSRTPSL PSHFSSVRYL RTGRDPSSRT YEIIPPVNWG IRIVPEKKAF VIERFGKYVK TLPSGIHFLI PFVDRIAYVH
101: SLKEEAISIP DQSAITKDNV TIIIDGVLYV KIVDPKLASY GVENPIYAVI QLAQTTMRSE LGKITLDKTF EERDTLNEKI VESINMAAKS WGLECLRYEI
201: RDISPPRGVR AAMEMQAEAE RKKRAQILES EGERQAHINI ADGKKSSVIL ASEAARMDQV NRAQGEAEAI LAKAKATAEG LAVVSKSLKE NGGPEAASLR
301: IAEQYIQAFS NIAKEGTTML LPSSASNPAN MMAQALTMYK SLLGNPSSGK LSGTAPPSIA GQLEGNDSSS EVKGESSTNA TVTSGIPDYR GKPGFSLQSP
401: PKRE

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.