CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024540_P001	Maize	mitochondrion	93.69	94.16
Zm00001d049533_P001	Maize	plastid	78.03	77.44
HORVU0Hr1G021000.1	Barley	plastid	40.91	68.64
TraesCS7D01G295000.1	Wheat	mitochondrion	62.12	67.21
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	62.12	67.21
Os08t0158500-02	Rice	mitochondrion	62.63	65.78
TraesCS7B01G187500.1	Wheat	golgi, mitochondrion	60.35	65.3
Solyc02g088360.1.1	Tomato	cytosol	21.72	64.18
PGSC0003DMT400069221	Potato	cytosol	49.24	63.73
GSMUA_AchrUn_...	Banana	cytosol	47.22	62.33
CDX89237	Canola	mitochondrion	56.57	56.71
Bra029043.1-P	Field mustard	mitochondrion	51.52	56.51
CDY43841	Canola	mitochondrion	51.01	56.27
CDY19053	Canola	mitochondrion	56.31	56.03
CDY14335	Canola	plastid	51.01	55.49
KRH64272	Soybean	mitochondrion	55.3	54.21
KRH53657	Soybean	mitochondrion	55.3	54.21
AT4G27585.1	Thale cress	mitochondrion	54.55	52.55
Bra022695.1-P	Field mustard	mitochondrion	48.23	52.47
AT5G54100.1	Thale cress	mitochondrion	50.76	50.12
PGSC0003DMT400001564	Potato	mitochondrion	53.54	50.0
Solyc03g080050.2.1	Tomato	plastid	53.03	49.53
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	54.8	49.32
CDY43054	Canola	mitochondrion	52.27	49.29
CDY46788	Canola	golgi	44.19	49.02
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	49.24	48.99
VIT_04s0023g01410.t01	Wine grape	mitochondrion	8.08	47.76
CDY28794	Canola	plastid	47.98	47.03
Bra022696.1-P	Field mustard	plastid	47.98	47.03
Bra003016.1-P	Field mustard	cytosol	49.24	46.99
CDY41775	Canola	plastid	42.17	44.18
CDY41774	Canola	mitochondrion	48.48	36.36
CDY28795	Canola	mitochondrion	48.74	36.07
Os08t0161100-00	Rice	cytosol	19.7	35.29

Protein Annotations

Gene3D:3.30.479.30	MapMan:35.2	EntrezGene:8080843	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C
UniProt:C5YHB6	ncoils:Coil	EnsemblPlants:EES13390	ProteinID:EES13390	ProteinID:EES13390.1	GO:GO:0005575
GO:GO:0016020	PFAM:PF01145	PFAM:PF16200	PRINTS:PR00721	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10
SMART:SM00244	EnsemblPlantsGene:SORBI_3007G048700	SUPFAM:SSF117892	unigene:Sbi.3906	InterPro:Stomatin_fam	UniParc:UPI0001A8742C
RefSeq:XP_002443895.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:4836377..4840990

Molecular Weight (calculated)

43405.9 Da

IEP (calculated)

7.038

GRAVY (calculated)

-0.361

Length

396 amino acids

Sequence
(BLAST)

001: MASLLRRSAA PARQLLLLPR HLAAAGGSAP ASSRSFSRFH PRDDSSMFDP PEPPVNWGVS IVPEKKAFVI ERFGKYLKTL GSGFHLLIPA VDRIAYVHSL
101: KEETIPIPHQ NAITKDNVTI QIDSVIYVKI MDPYLASYGV ENPIYAVLQL AQTTMRSELG KITLDKTFEE RDALNEKIVS AINEAATDWG LKCIRYEIRD
201: ITPPIGIKQA MEMQAEAERR KRAQILESEG KKQAQILESE GKKTAQILES EGAMLDLANR AKGAAEAILA KSEATARGMR LVSDAMTTEG SAKAASLKLA
301: EQYIEAFSNL AQKTNTMLLP GDSASPASFV AQAMKTYEHI HSHNQALKSH PQIQELEESG ETSPAAPSSE ASTMPPLIED ADSNQTFTLQ RPKNKK

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.