Factsheet for Zm00001d024540_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 14690504
extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 14690504

F Hochholdinger, L Guo, PS Schnable

Department of Agronomy, Iowa State University, Ames, IA 50011, USA.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13390	Sorghum	mitochondrion	94.16	93.69
Zm00001d049533_P001	Maize	plastid	78.68	77.69
HORVU0Hr1G021000.1	Barley	plastid	39.85	66.53
TraesCS7D01G295000.1	Wheat	mitochondrion	61.42	66.12
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	61.42	66.12
PGSC0003DMT400069221	Potato	cytosol	50.51	65.03
Solyc02g088360.1.1	Tomato	cytosol	22.08	64.93
Os08t0158500-02	Rice	mitochondrion	61.93	64.72
TraesCS7B01G187500.1	Wheat	golgi, mitochondrion	59.9	64.48
GSMUA_AchrUn_...	Banana	cytosol	47.21	62.0
CDY43841	Canola	mitochondrion	51.52	56.55
Bra029043.1-P	Field mustard	mitochondrion	51.78	56.51
CDX89237	Canola	mitochondrion	56.35	56.2
CDY14335	Canola	plastid	51.52	55.77
CDY19053	Canola	mitochondrion	56.09	55.53
KRH64272	Soybean	mitochondrion	54.82	53.47
KRH53657	Soybean	mitochondrion	54.57	53.22
Bra022695.1-P	Field mustard	mitochondrion	48.73	52.75
AT4G27585.1	Thale cress	mitochondrion	54.82	52.55
PGSC0003DMT400001564	Potato	mitochondrion	54.57	50.71
Solyc03g080050.2.1	Tomato	plastid	54.31	50.47
AT5G54100.1	Thale cress	mitochondrion	51.27	50.37
CDY43054	Canola	mitochondrion	52.54	49.29
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	49.75	49.25
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	54.82	49.09
CDY46788	Canola	golgi	44.42	49.02
VIT_04s0023g01410.t01	Wine grape	mitochondrion	8.12	47.76
Bra003016.1-P	Field mustard	cytosol	49.75	47.23
CDY28794	Canola	plastid	47.72	46.53
Bra022696.1-P	Field mustard	plastid	47.72	46.53
CDY41775	Canola	plastid	41.88	43.65
CDY41774	Canola	mitochondrion	48.98	36.55
CDY28795	Canola	mitochondrion	49.49	36.45
Os08t0161100-00	Rice	cytosol	19.54	34.84

Protein Annotations

Gene3D:3.30.479.30	MapMan:35.2	EntrezGene:541819	EMBL:AF236372	ProteinID:AQK41458.1	EMBL:BT065216
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	ncoils:Coil	EMBL:EU967810	GO:GO:0005575
GO:GO:0016020	PFAM:PF01145	PFAM:PF16200	PRINTS:PR00721	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10
UniProt:Q9M585	SMART:SM00244	SUPFAM:SSF117892	InterPro:Stomatin_fam	UniParc:UPI00000A2017	EnsemblPlantsGene:Zm00001d024540
EnsemblPlants:Zm00001d024540_P001	EnsemblPlants:Zm00001d024540_T001	:	:	:	:

Description

stomatin1 stomatin1

Coordinates

chr10:-:77144191..77149860

Molecular Weight (calculated)

43279.7 Da

IEP (calculated)

6.902

GRAVY (calculated)

-0.371

Length

394 amino acids

Sequence
(BLAST)

001: MASLLRRSAV PARQLLLLPR HFAAAGSAPA LSRSFSRFNP RDDSSMFDPP EPPVNWGVSI VPEKKAYVVE RFGKYLKTLG SGFHLLIPAV DRIAYVHSLK
101: EETIPIPHQN AITKDNVTIQ IDSVIYVKIM DPYLASYGVE NPIYAVLQLA QTTMRSELGK ITLDKTFEER DALNEKIVSA INEAATDWGL KCIRYEIRDI
201: NPPAGIRQAM EMQAEAERKK RAQILESEGM KQAQILESEG KKTAQILESE GAMLDLANRA KGAAEAILAK SEATARGMRL VSDAMTTEGS AKAASLKLAE
301: QYIEAFSNLA QKTNTMLLPG DSASPASFVA QAMKTYEQIH SHSQALKSHP QIEELKESGE TSPAPSSEAS KTPPLIEEAD SNQTFSLQRP KNKQ

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.