CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14335	Canola	plastid	84.96	83.79
CDY43054	Canola	mitochondrion	91.09	77.86
CDY46788	Canola	golgi	76.04	76.47
PGSC0003DMT400069221	Potato	cytosol	63.51	74.51
CDX89237	Canola	mitochondrion	76.6	69.62
CDY19053	Canola	mitochondrion	77.16	69.6
GSMUA_AchrUn_...	Banana	cytosol	56.55	67.67
CDY28794	Canola	plastid	74.37	66.09
AT5G54100.1	Thale cress	mitochondrion	73.26	65.59
KRH64272	Soybean	mitochondrion	71.59	63.61
CDY41775	Canola	plastid	66.85	63.49
HORVU0Hr1G021000.1	Barley	plastid	41.5	63.14
KRH53657	Soybean	mitochondrion	71.03	63.12
VIT_09s0002g01630.t01	Wine grape	mitochondrion	71.87	61.43
Solyc03g080050.2.1	Tomato	plastid	68.52	58.02
PGSC0003DMT400001564	Potato	mitochondrion	68.25	57.78
TraesCS7B01G187500.1	Wheat	golgi, mitochondrion	58.77	57.65
TraesCS7D01G295000.1	Wheat	mitochondrion	57.94	56.83
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	57.66	56.56
HORVU6Hr1G021720.1	Barley	mitochondrion	39.0	56.45
TraesCS4A01G000200.1	Wheat	mitochondrion	54.87	55.49
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	61.28	55.28
TraesCS4B01G000200.1	Wheat	mitochondrion	55.15	54.7
TraesCS5B01G556400.1	Wheat	mitochondrion	56.27	54.45
Os08t0158500-02	Rice	mitochondrion	57.1	54.38
TraesCS4D01G000200.3	Wheat	mitochondrion	56.27	54.16
TraesCS5D01G552400.1	Wheat	mitochondrion	56.55	53.99
HORVU4Hr1G000580.1	Barley	plasma membrane	55.99	53.32
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	64.62	52.73
TraesCS4A01G322100.1	Wheat	mitochondrion	52.09	52.09
Zm00001d024540_P001	Maize	mitochondrion	56.55	51.52
CDY41774	Canola	mitochondrion	75.21	51.14
EES13390	Sorghum	mitochondrion	56.27	51.01
CDY28795	Canola	mitochondrion	74.37	49.91
Zm00001d049533_P001	Maize	plastid	54.04	48.62
TraesCS1B01G457000.1	Wheat	mitochondrion	39.55	41.89
HORVU7Hr1G088720.8	Barley	extracellular, golgi	22.84	35.65
TraesCS1B01G458900.2	Wheat	mitochondrion	24.23	35.37
TraesCS1B01G457600.1	Wheat	mitochondrion	24.23	35.37
Os08t0161100-00	Rice	cytosol	20.61	33.48
HORVU1Hr1G049770.3	Barley	plastid	14.48	24.64
HORVU2Hr1G107420.2	Barley	plastid	12.81	22.66

Protein Annotations

EnsemblPlants:CDY43841	EnsemblPlantsGene:GSBRNA2T00077363001	Gene3D:3.30.479.30	GO:A0A078I202	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	InterPro:Stomatin_fam	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10
PFAM:PF01145	PFAM:PF16200	PRINTS:PR00721	ProteinID:CDY43841	ProteinID:CDY43841.1	SMART:SM00244
SUPFAM:SSF117892	UniParc:UPI0004EADC62	UniProt:A0A078I202	MapMan:35.2	:	:

Description

BnaC03g14740DBnaC03g14740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I202]

Coordinates

chrLK032569:+:225981..228461

Molecular Weight (calculated)

39009.1 Da

IEP (calculated)

9.380

GRAVY (calculated)

-0.152

Length

359 amino acids

Sequence
(BLAST)

001: MMIRSRSAAT TAVRSLGYLR HSSALVHSPL LSGATATPVR HFTSPGNSYQ IKPPVNWGIR IVPEKRACVI ERFGKYVKTL ESGIHFLVPG VDRIAYVHSL
101: KEEAIPIGNQ TAITKDNVSI HIDGVLYVKI VNPHLASYGV ENPIYAVMQL AQTTMRSELG KITLDKTFEE RDALNVKIVE AINVAAKDWG LECLRYEIRD
201: IMPPNGVRVA MEMQAEAERK KRAQILESEG ERQAHINIAD GKKSSVILES EAAKMDQVNR ASGEAEAILA RAQATARGLT MLSQSLKETG GVEAASLRVA
301: EQYIQAFGNI AKEGTTMLLP SSAANPANMI AQALTMYKSL VPNGGIQETS AVESSSKAK

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.