CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64272	Soybean	mitochondrion	96.29	96.29
PGSC0003DMT400069221	Potato	cytosol	58.17	76.8
CDY43841	Canola	mitochondrion	63.12	71.03
Bra029043.1-P	Field mustard	mitochondrion	63.12	70.64
CDX89237	Canola	mitochondrion	68.07	69.62
CDY19053	Canola	mitochondrion	68.32	69.35
GSMUA_AchrUn_...	Banana	cytosol	51.24	69.0
CDY14335	Canola	plastid	61.63	68.41
Bra022695.1-P	Field mustard	mitochondrion	60.64	67.31
HORVU0Hr1G021000.1	Barley	plastid	39.11	66.95
VIT_09s0002g01630.t01	Wine grape	mitochondrion	69.31	66.67
AT4G27585.1	Thale cress	mitochondrion	67.08	65.94
PGSC0003DMT400001564	Potato	mitochondrion	67.08	63.92
Solyc03g080050.2.1	Tomato	plastid	66.58	63.44
CDY46788	Canola	golgi	55.94	63.31
AT5G54100.1	Thale cress	mitochondrion	62.62	63.09
CDY43054	Canola	mitochondrion	64.11	61.67
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	54.95	60.66
TraesCS7D01G295000.1	Wheat	mitochondrion	54.95	60.66
Bra003016.1-P	Field mustard	cytosol	61.88	60.24
TraesCS7B01G187500.1	Wheat	golgi, mitochondrion	53.96	59.56
TraesCS4A01G000200.1	Wheat	mitochondrion	51.98	59.15
Os08t0158500-02	Rice	mitochondrion	55.2	59.15
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	57.43	58.29
TraesCS4B01G000200.1	Wheat	mitochondrion	51.98	58.01
CDY28794	Canola	plastid	57.92	57.92
Bra022696.1-P	Field mustard	plastid	57.92	57.92
TraesCS4D01G000200.3	Wheat	mitochondrion	52.97	57.37
HORVU6Hr1G021720.1	Barley	mitochondrion	35.15	57.26
TraesCS5B01G556400.1	Wheat	mitochondrion	52.48	57.14
TraesCS5D01G552400.1	Wheat	mitochondrion	52.97	56.91
HORVU4Hr1G000580.1	Barley	plasma membrane	52.97	56.76
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	61.39	56.36
CDY41775	Canola	plastid	52.48	56.08
TraesCS4A01G322100.1	Wheat	mitochondrion	49.51	55.71
EES13390	Sorghum	mitochondrion	54.21	55.3
Zm00001d024540_P001	Maize	mitochondrion	53.22	54.57
Zm00001d049533_P001	Maize	plastid	52.48	53.13
CDY41774	Canola	mitochondrion	60.89	46.59
CDY28795	Canola	mitochondrion	61.14	46.17
TraesCS1B01G457000.1	Wheat	mitochondrion	36.39	43.36
HORVU7Hr1G088720.8	Barley	extracellular, golgi	23.02	40.43
TraesCS1B01G458900.2	Wheat	mitochondrion	23.02	37.8
TraesCS1B01G457600.1	Wheat	mitochondrion	23.02	37.8
Os08t0161100-00	Rice	cytosol	19.31	35.29
HORVU1Hr1G049770.3	Barley	plastid	12.62	24.17
HORVU2Hr1G107420.2	Barley	plastid	11.39	22.66

Protein Annotations

EntrezGene:100809006	Gene3D:3.30.479.30	MapMan:35.2	EMBL:ACUP02003480	EMBL:BT099015	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	UniProt:C6TMQ6	EnsemblPlantsGene:GLYMA_06G138500	GO:GO:0005575	GO:GO:0016020
EnsemblPlants:KRH53657	ProteinID:KRH53657	ProteinID:KRH53657.1	PFAM:PF01145	PFAM:PF16200	PRINTS:PR00721
PANTHER:PTHR43327	PANTHER:PTHR43327:SF10	SMART:SM00244	SUPFAM:SSF117892	InterPro:Stomatin_fam	UniParc:UPI0001B172AB
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:11306506..11310586

Molecular Weight (calculated)

44076.9 Da

IEP (calculated)

9.698

GRAVY (calculated)

-0.295

Length

404 amino acids

Sequence
(BLAST)

001: MATIWKTNAA RNAVRSLTQS LPFTARTPSI PSHFSSVRYL RTGRDPSSRT YEIIPPVNWG IRIVPEKKAF VIERFGKYVK TLPSGIHFLI PFVDRIAYVH
101: SLKEEAISIP DQSAITKDNV TIIIDGVLYV KIVDPKLASY GVENPIYAVI QLAQTTMRSE LGKITLDKTF EERDTLNEKI VESINMAAKS WGLECLRYEI
201: RDISPPRGVR AAMEMQAEAE RKKRAQILES EGERQAHINI ADGKKSSVIL ASEAARMDQV NRAQGEAEAI LAKAKATAEG LAVVSKSLKE SGGPEAASLR
301: IAEQYIQAFS NIAKQGTTML LPSSASNPAN MMAQALTMYK SLLGNPSNDK HSGTAPPSIA GQLEGNDLSS EVKGESLTTA TVTSGIPDYR GKSGFSLQSP
401: PKRE

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.