Factsheet for Solyc06g073030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069221	Potato	cytosol	66.33	86.27
Solyc02g088360.1.1	Tomato	cytosol	21.36	63.43
Solyc03g080050.2.1	Tomato	plastid	65.33	61.32
CDY43841	Canola	mitochondrion	55.28	61.28
Bra029043.1-P	Field mustard	mitochondrion	55.03	60.66
GSMUA_AchrUn_...	Banana	cytosol	45.48	60.33
CDY14335	Canola	plastid	54.52	59.62
CDX89237	Canola	mitochondrion	58.29	58.73
CDY19053	Canola	mitochondrion	58.04	58.04
KRH64272	Soybean	mitochondrion	58.79	57.92
KRH53657	Soybean	mitochondrion	58.29	57.43
AT5G54100.1	Thale cress	mitochondrion	57.79	57.36
HORVU0Hr1G021000.1	Barley	plastid	33.92	57.2
AT4G27585.1	Thale cress	mitochondrion	58.79	56.93
Bra022695.1-P	Field mustard	mitochondrion	51.51	56.32
VIT_09s0002g01630.t01	Wine grape	mitochondrion	58.79	55.71
CDY46788	Canola	golgi	49.25	54.9
Bra003016.1-P	Field mustard	cytosol	56.53	54.22
CDY43054	Canola	mitochondrion	56.03	53.1
TraesCS4A01G000200.1	Wheat	mitochondrion	45.98	51.55
CDY28794	Canola	plastid	52.26	51.49
Bra022696.1-P	Field mustard	plastid	52.26	51.49
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	47.24	51.37
TraesCS7D01G295000.1	Wheat	mitochondrion	47.24	51.37
HORVU6Hr1G021720.1	Barley	mitochondrion	31.91	51.21
TraesCS7B01G187500.1	Wheat	golgi, mitochondrion	46.98	51.09
TraesCS4B01G000200.1	Wheat	mitochondrion	46.23	50.83
HORVU4Hr1G000580.1	Barley	plasma membrane	47.74	50.4
Os08t0158500-02	Rice	mitochondrion	47.24	49.87
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	55.03	49.77
Zm00001d024540_P001	Maize	mitochondrion	49.25	49.75
CDY41775	Canola	plastid	47.24	49.74
TraesCS4D01G000200.3	Wheat	mitochondrion	46.48	49.6
EES13390	Sorghum	mitochondrion	48.99	49.24
TraesCS5D01G552400.1	Wheat	mitochondrion	46.48	49.2
TraesCS5B01G556400.1	Wheat	mitochondrion	45.48	48.79
Zm00001d049533_P001	Maize	plastid	47.74	47.62
TraesCS4A01G322100.1	Wheat	mitochondrion	42.21	46.8
CDY41774	Canola	mitochondrion	51.51	38.83
CDY28795	Canola	mitochondrion	51.76	38.5
TraesCS1B01G457000.1	Wheat	mitochondrion	32.16	37.76
TraesCS1B01G458900.2	Wheat	mitochondrion	19.35	31.3
TraesCS1B01G457600.1	Wheat	mitochondrion	19.35	31.3
HORVU7Hr1G088720.8	Barley	extracellular, golgi	17.59	30.43
Os08t0161100-00	Rice	cytosol	14.57	26.24
HORVU1Hr1G049770.3	Barley	plastid	12.81	24.17
HORVU2Hr1G107420.2	Barley	plastid	10.8	21.18

Protein Annotations

EnsemblPlants:Solyc06g073030.1.1	EnsemblPlantsGene:Solyc06g073030.1	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	InterPro:Stomatin_fam	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10	PFAM:PF01145
PFAM:PF16200	PRINTS:PR00721	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0002765BC1
UniProt:K4C923	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6:-:44999009..45001001

Molecular Weight (calculated)

44536.1 Da

IEP (calculated)

9.136

GRAVY (calculated)

-0.429

Length

398 amino acids

Sequence
(BLAST)

001: MNIGRSSSVN KLWLLNHHIH SRTISTTTSS LVTKQTSKQL PSRHLSPSFT STTVRHFFFR SRDPYAKYHV RVPLNLGIRI VPEKKAHVVE RFGKYVKTLT
101: PGIHFLIPFV DRIAYAHSLK EETVPIPNQT AITRDNMLEI CRLYPKLASY GVENPLYAVI QLAQTTMRSE LGKISLDKTF EERDTLNDKI VLAINDAAKD
201: WGLKCLRYEI RDITPPRGVR SAMEMQAEAE RKKRAQIFES EGERQANINI ADGRKSSVIL DSEAAKMDLV NRAQGEAEAI LSKAQATAKG IALVSQTLKE
301: HGDAEAASLR IAEQYIQAFS SIAKEGTTLL LPTNVSDPAS MVAQALHIYK NLTSKNVGIE QTKLKVSDSF EVINNDSFIT DKSTNEDDET DGDDKKDH

Best Arabidopsis Sequence Match ( AT5G54100.1 )
(BLAST)

001: MNQLALSRSG YTAAVRFLPM LSAAVPKILS SLAAASTVRN FSSTGSPLTS YQINKPSPSK SFTSRLLHQS SSAGTPPQQL FGARSFSSPS SDFNSYHINP
101: PSNWGIRIVP ERKACVIERF GKFHTTLPAG IHFLVPFVDR IAYVHSLKEE AIPIGNQTAI TKDNVSIHID GVLYVKIVDP KLASYGVENP IYAVMQLAQT
201: TMRSELGKIT LDKTFEERDT LNEKIVEAIN VAAKDWGLQC LRYEIRDIMP PNGVRVAMEM QAEAERKKRA QILESEGERQ AHINRADGKK SSVILESEAA
301: MMDQVNRAQG EAEAILARAQ ATAKGLAMVS QSLKEAGGEE AASLRVAEQY IQAFGKIAKE GTTMLLPSNV DNPASMIAQA LGMYKGLSTK VPTVVSGKLL
401: E

Arabidopsis Description

At5g54100 [Source:UniProtKB/TrEMBL;Acc:Q9LVW0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.