Factsheet for Solyc03g080050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001564	Potato	mitochondrion	98.11	98.11
GSMUA_AchrUn_...	Banana	cytosol	49.53	70.0
Solyc02g088360.1.1	Tomato	cytosol	21.7	68.66
CDY43841	Canola	mitochondrion	58.02	68.52
CDX89237	Canola	mitochondrion	63.21	67.85
KRH64272	Soybean	mitochondrion	64.62	67.82
VIT_09s0002g01630.t01	Wine grape	mitochondrion	66.98	67.62
CDY19053	Canola	mitochondrion	63.21	67.34
HORVU0Hr1G021000.1	Barley	plastid	37.26	66.95
KRH53657	Soybean	mitochondrion	63.44	66.58
Bra029043.1-P	Field mustard	mitochondrion	56.13	65.93
Solyc06g073030.1.1	Tomato	endoplasmic reticulum, extracellular	61.32	65.33
CDY14335	Canola	plastid	54.95	64.01
AT4G27585.1	Thale cress	mitochondrion	61.79	63.75
AT5G54100.1	Thale cress	mitochondrion	58.49	61.85
Bra022695.1-P	Field mustard	mitochondrion	53.07	61.81
CDY46788	Canola	golgi	50.47	59.94
Os08t0158500-02	Rice	mitochondrion	52.83	59.42
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	50.94	59.02
TraesCS4A01G000200.1	Wheat	mitochondrion	49.29	58.87
HORVU6Hr1G021720.1	Barley	mitochondrion	34.43	58.87
TraesCS7D01G295000.1	Wheat	mitochondrion	50.71	58.74
TraesCS7B01G187500.1	Wheat	golgi, mitochondrion	50.47	58.47
TraesCS4B01G000200.1	Wheat	mitochondrion	49.76	58.29
TraesCS5B01G556400.1	Wheat	mitochondrion	50.94	58.22
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	60.14	57.95
CDY43054	Canola	mitochondrion	57.08	57.62
HORVU4Hr1G000580.1	Barley	plasma membrane	51.18	57.56
TraesCS4D01G000200.3	Wheat	mitochondrion	50.47	57.37
Bra003016.1-P	Field mustard	cytosol	55.9	57.11
TraesCS5D01G552400.1	Wheat	mitochondrion	50.47	56.91
Bra022696.1-P	Field mustard	plastid	53.77	56.44
CDY28794	Canola	plastid	53.77	56.44
TraesCS4A01G322100.1	Wheat	mitochondrion	47.17	55.71
Zm00001d024540_P001	Maize	mitochondrion	50.47	54.31
CDY41775	Canola	plastid	48.11	53.97
EES13390	Sorghum	mitochondrion	49.53	53.03
Zm00001d049533_P001	Maize	plastid	49.53	52.63
CDY41774	Canola	mitochondrion	54.01	43.37
CDY28795	Canola	mitochondrion	54.72	43.36
TraesCS1B01G457000.1	Wheat	mitochondrion	33.49	41.89
HORVU7Hr1G088720.8	Barley	extracellular, golgi	21.46	39.57
Os08t0161100-00	Rice	cytosol	19.58	37.56
TraesCS1B01G458900.2	Wheat	mitochondrion	19.58	33.74
TraesCS1B01G457600.1	Wheat	mitochondrion	19.58	33.74
HORVU1Hr1G049770.3	Barley	plastid	12.26	24.64
HORVU2Hr1G107420.2	Barley	plastid	10.61	22.17

Protein Annotations

EnsemblPlants:Solyc03g080050.2.1	EnsemblPlantsGene:Solyc03g080050.2	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C	InterPro:Stomatin_fam	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10	PFAM:PF01145
PFAM:PF16200	PRINTS:PR00721	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000276835A
UniProt:K4BHY1	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3:-:51926610..51933678

Molecular Weight (calculated)

46483.7 Da

IEP (calculated)

9.484

GRAVY (calculated)

-0.302

Length

424 amino acids

Sequence
(BLAST)

001: MNTARSNSLS KLRLLNHLLQ STPVVTCRAV STLSSPILKQ SSLLSGQIHP RQLSPFFTPV RHFRNARDPS VRYEIPPPVN WGVRIVPEKK AYVVERFGKY
101: AKTLTPGIHV LIPFVDKIAY VHSLKEEAIP IPDQSAITKD NVSILIDGVL YVKIVDPKLA SYGVENPLYA VIQLAQTTMR SELGKITLDK TFEERDTLNE
201: KIVMAINEAA KDWGLKCLRY EIRDISPPRG VRAAMEMQAE AERKKRAQVL ESEGERQANI NIADGRKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA
301: KGIAMVSETL KEHGGAEAAS LRIAEQYIQA FSNIAKEGTT LLLPTNASDP ASMMSQALAV YKNVVSKNLG TQLPVTSQSK LTKNTRQSDS SAVSGDDSSL
401: TANSADDHHL SDPIFSLQSQ KKDD

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.