Factsheet for PGSC0003DMT400001564

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g080050.2.1	Tomato	plastid	98.11	98.11
PGSC0003DMT400069221	Potato	cytosol	61.32	84.97
GSMUA_AchrUn_...	Banana	cytosol	49.53	70.0
KRH64272	Soybean	mitochondrion	65.09	68.32
CDY43841	Canola	mitochondrion	57.78	68.25
CDX89237	Canola	mitochondrion	62.74	67.34
VIT_09s0002g01630.t01	Wine grape	mitochondrion	66.51	67.14
KRH53657	Soybean	mitochondrion	63.92	67.08
HORVU0Hr1G021000.1	Barley	plastid	37.26	66.95
CDY19053	Canola	mitochondrion	62.74	66.83
Bra029043.1-P	Field mustard	mitochondrion	55.9	65.65
CDY14335	Canola	plastid	55.19	64.29
AT4G27585.1	Thale cress	mitochondrion	61.32	63.26
Bra022695.1-P	Field mustard	mitochondrion	53.07	61.81
AT5G54100.1	Thale cress	mitochondrion	58.25	61.6
CDY46788	Canola	golgi	50.47	59.94
Os08t0158500-02	Rice	mitochondrion	52.59	59.15
TraesCS4A01G000200.1	Wheat	mitochondrion	49.29	58.87
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	50.71	58.74
TraesCS7D01G295000.1	Wheat	mitochondrion	50.47	58.47
HORVU6Hr1G021720.1	Barley	mitochondrion	34.2	58.47
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	60.61	58.41
TraesCS4B01G000200.1	Wheat	mitochondrion	49.76	58.29
TraesCS5B01G556400.1	Wheat	mitochondrion	50.94	58.22
TraesCS7B01G187500.1	Wheat	golgi, mitochondrion	50.24	58.2
HORVU4Hr1G000580.1	Barley	plasma membrane	51.42	57.82
CDY43054	Canola	mitochondrion	56.84	57.38
TraesCS4D01G000200.3	Wheat	mitochondrion	50.47	57.37
TraesCS5D01G552400.1	Wheat	mitochondrion	50.47	56.91
Bra003016.1-P	Field mustard	cytosol	55.66	56.87
Bra022696.1-P	Field mustard	plastid	53.77	56.44
CDY28794	Canola	plastid	53.77	56.44
TraesCS4A01G322100.1	Wheat	mitochondrion	47.17	55.71
Zm00001d024540_P001	Maize	mitochondrion	50.71	54.57
CDY41775	Canola	plastid	48.11	53.97
EES13390	Sorghum	mitochondrion	50.0	53.54
Zm00001d049533_P001	Maize	plastid	49.29	52.38
CDY41774	Canola	mitochondrion	54.01	43.37
CDY28795	Canola	mitochondrion	54.48	43.18
TraesCS1B01G457000.1	Wheat	mitochondrion	33.49	41.89
HORVU7Hr1G088720.8	Barley	extracellular, golgi	21.7	40.0
Os08t0161100-00	Rice	cytosol	19.34	37.1
TraesCS1B01G458900.2	Wheat	mitochondrion	19.58	33.74
TraesCS1B01G457600.1	Wheat	mitochondrion	19.58	33.74
HORVU1Hr1G049770.3	Barley	plastid	12.5	25.12
HORVU2Hr1G107420.2	Barley	plastid	10.85	22.66

Protein Annotations

EntrezGene:102594992	Gene3D:3.30.479.30	MapMan:35.2	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Band_7_C
ncoils:Coil	GO:GO:0005575	GO:GO:0016020	UniProt:M0ZIP5	PFAM:PF01145	PFAM:PF16200
EnsemblPlantsGene:PGSC0003DMG400000577	PGSC:PGSC0003DMG400000577	EnsemblPlants:PGSC0003DMT400001564	PRINTS:PR00721	PANTHER:PTHR43327	PANTHER:PTHR43327:SF10
SMART:SM00244	SUPFAM:SSF117892	InterPro:Stomatin_fam	UniParc:UPI000295EFBC	RefSeq:XP_006347534.1	SEG:seg

Description

Band 7 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000577]

Coordinates

chr3:-:47225362..47232852

Molecular Weight (calculated)

46303.5 Da

IEP (calculated)

9.484

GRAVY (calculated)

-0.271

Length

424 amino acids

Sequence
(BLAST)

001: MNTARSNSLS KLRLLNHLLQ STPVATCRAV STLSSPILKQ SSLLSGQIPP RQLSPFFTSV RHFRNARDPS VRYEIPPPVN WGVRIVPEKK AYVVERFGKY
101: AKTLTPGIHV LIPFVDKIAY VHSLKEEAIP IPDQSAITKD NVSILIDGVL YVKIVDPKLA SYGVENPLYA VIQLAQTTMR SELGKITLDK TFEERDTLNE
201: KIVMAINEAA KDWGLKCLRY EIRDISPPRG VRAAMEMQAE AERKKRAQVL ESEGERQANI NIADGRKSSV ILASEAAKMD QVNRALGEAE AILARAQATA
301: KGIAMVSETL KEHGGAEAAS LRIAEQYIQA FSNIAKEGTT LLLPTNASDP ASMMSQALAV YKNVVGKNLG TQLPVTSQSK LTKNTRQSDS SAVSGDDSSL
401: TANSAADDHL SDPIFSLQSH KKDD

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.