Factsheet for VIT_04s0023g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 3
cytosol 2
peroxisome 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, nucleus, peroxisome, plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G021000.1	Barley	plastid	53.73	15.25
HORVU7Hr1G088720.8	Barley	extracellular, golgi	46.27	13.48
GSMUA_AchrUn_...	Banana	cytosol	59.7	13.33
HORVU6Hr1G021720.1	Barley	mitochondrion	49.25	13.31
Os08t0161100-00	Rice	cytosol	43.28	13.12
Os08t0158500-02	Rice	mitochondrion	56.72	10.08
TraesCS4A01G000200.1	Wheat	mitochondrion	52.24	9.86
TraesCS7D01G295000.1	Wheat	mitochondrion	53.73	9.84
TraesCS7B01G187500.1	Wheat	golgi, mitochondrion	53.73	9.84
TraesCS7A01G299700.1	Wheat	mitochondrion, plastid	53.73	9.84
TraesCS4A01G322100.1	Wheat	mitochondrion	52.24	9.75
TraesCS4B01G000200.1	Wheat	mitochondrion	52.24	9.67
TraesCS4D01G000200.3	Wheat	mitochondrion	52.24	9.38
TraesCS1B01G457600.1	Wheat	mitochondrion	34.33	9.35
TraesCS1B01G458900.2	Wheat	mitochondrion	34.33	9.35
TraesCS5D01G552400.1	Wheat	mitochondrion	52.24	9.31
VIT_09s0002g01630.t01	Wine grape	mitochondrion	58.21	9.29
HORVU4Hr1G000580.1	Barley	plasma membrane	52.24	9.28
TraesCS5B01G556400.1	Wheat	mitochondrion	50.75	9.16
GSMUA_Achr7P04660_001	Banana	golgi, mitochondrion	59.7	9.09
TraesCS1B01G457000.1	Wheat	mitochondrion	43.28	8.55
Zm00001d024540_P001	Maize	mitochondrion	47.76	8.12
EES13390	Sorghum	mitochondrion	47.76	8.08
Zm00001d049533_P001	Maize	plastid	47.76	8.02
HORVU2Hr1G107420.2	Barley	plastid	11.94	3.94
HORVU1Hr1G049770.3	Barley	plastid	10.45	3.32

Protein Annotations

ArrayExpress:VIT_04s0023g01410	EMBL:FN594959	EnsemblPlants:VIT_04s0023g01410.t01	EnsemblPlantsGene:VIT_04s0023g01410	Gene3D:3.30.479.30	InterPro:Band_7/SPFH_dom_sf
PANTHER:PTHR43327	PANTHER:PTHR43327:SF10	ProteinID:CBI17552	ProteinID:CBI17552.3	SUPFAM:SSF117892	UniParc:UPI0001BE0E63
UniProt:D7SPH3	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr4:-:17908397..17908600

Molecular Weight (calculated)

7439.9 Da

IEP (calculated)

5.547

GRAVY (calculated)

-0.004

Length

67 amino acids

Sequence
(BLAST)

1: MPSQWKLGGL KVLNYHRTNA HSLKEEVIPI PDQSAIAKDN VSILIDGVFY VNIVDPTLAS QFNSCLE

Best Arabidopsis Sequence Match ( AT4G27585.1 )
(BLAST)

001: MNHLVRKSSV GYSALRSVSY LRQSAVTSPP PIFSAAASTV RQFTSAGYPS NSFQLTPPTN WGIRIVPERK AFVIERFGKY ATTLPSGIHF LIPFVDRIAY
101: VHSLKEEAIP IPNQTAITKD NVSIHIDGVL YVKIVDPKLA SYGVESPIYA VVQLAQTTMR SELGKITLDK TFEERDTLNE KIVEAINVAA KDWGLQCLRY
201: EIRDIMPPHG VRAAMEMQAE AERKKRAQIL ESEGERQSHI NIADGKKSSV ILASEAAKMD QVNRAQGEAE AILARAQATA KGLVLLSQSL KETGGVEAAS
301: LRVAEQYITA FGNIAKEGTI MLLPSGASNP ASMIAQALTM YKSLVINGPS KDHQETQALD ETDLEELEDM GEKHISEGSN NRSGSISFDT EKPGHTGEPR
401: FSLQNRNKDP Q

Arabidopsis Description

SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:UniProtKB/TrEMBL;Acc:Q93VP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.