Factsheet for TraesCS5B01G231100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817
golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G235400.2	Wheat	plastid	96.51	96.64
TraesCS5A01G232800.1	Wheat	nucleus	95.39	96.2
HORVU5Hr1G066960.2	Barley	plastid	96.09	95.42
OQU89595	Sorghum	cytosol	82.4	92.91
Os09t0446800-01	Rice	plastid	87.15	88.26
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	72.91	88.03
CDY62106	Canola	cytosol	48.74	86.82
VIT_06s0004g01160.t01	Wine grape	cytosol	77.23	86.81
KRG93013	Soybean	nucleus	76.68	86.32
AT1G50480.1	Thale cress	cytosol	76.12	85.96
CDY37133	Canola	cytosol	75.84	85.78
Bra018851.1-P	Field mustard	cytosol	75.84	85.78
KRH36263	Soybean	cytosol, endoplasmic reticulum, nucleus	76.12	85.69
CDY22798	Canola	cytosol	75.7	85.62
CDY29587	Canola	cytosol	75.42	85.44
Solyc01g006280.2.1	Tomato	extracellular, nucleus	75.56	85.33
Bra030488.1-P	Field mustard	cytosol	75.28	85.28
PGSC0003DMT400081881	Potato	cytosol	75.14	84.86
Zm00001d020669_P001	Maize	extracellular	85.89	83.9
AT2G12280.1	Thale cress	plastid	9.36	74.44
AT2G12200.1	Thale cress	mitochondrion, plastid	6.28	71.43
KRH33286	Soybean	nucleus	37.85	70.21
CDY62107	Canola	plastid	23.6	69.55

Protein Annotations

KEGG:00670+6.3.4.3	KEGG:00720+6.3.4.3	Gene3D:1.10.8.770	Gene3D:3.10.410.10	MapMan:7.5.7.1	InterPro:Formate_THF_ligase
InterPro:Formate_THF_ligase_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004329	GO:GO:0005488
GO:GO:0005524	HAMAP:MF_01543	InterPro:P-loop_NTPase	PFAM:PF01268	ScanProsite:PS00721	ScanProsite:PS00722
PANTHER:PTHR43274	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS5B01G231100	EnsemblPlants:TraesCS5B01G231100.1	TIGR:cd00477	SEG:seg

Description

No Description!

Coordinates

chr5B:+:407634803..407640073

Molecular Weight (calculated)

76441.7 Da

IEP (calculated)

8.077

GRAVY (calculated)

-0.036

Length

716 amino acids

Sequence
(BLAST)

001: MDLPAPPTNH PRTLSSIILS RRRADGGARI NKCSASQRLL SPPPLPSHHS LLRLRPDRER PAVARSSAVS APPLVPPMTT PAPNPTIRRL DVASPVPADI
101: DIANAVEPLH IADIAAELGV PPEHYDLYGK YKAKVLLSVL DKLQGQQDGY YVVVGGITPT PLGEGKSTTT VGLCQALGAF LDKKVVTCVR QPSQGPTFGI
201: KGGAAGGGYS QVIPMDEFNL HMTGDIHAIT AANNLLAAAI DTRIFHEASQ SDKALFNRLC PPNKEGKRRF ADVMLRRLIK LGISKTDPDE LTPEEVRRFA
301: RLDIDPASIT WRRVMDVNDR FLRKITVGQG PEEKGMVRET GFDISVASEI MAVLALTTSL ADMRERLGRM VIGNSKAGEP VTADDLGLGG ALTVLMKDAI
401: HPTLMQTLEG TPVLVHAGPF ANIAHGNSSI VADKIALKLV GKGGFVVTEA GFGADIGTEK FMDIKCRYSG LTPQCAIIVA TIRALKMHGG GPDVVAGKPL
501: DHAYVSENVA LVEAGCVNLA KHISNTKGYG VNVVVAINKF ATDTDAEMEV VKKAAMTAGA FDAVVCSHHA HGGKGAVDLG VAVQRACESQ AEPLKFLYPL
601: DSSIKEKIES IAKFYGASGV EYSEQAEKQI EMYTKQGFSN LPICMAKTQY SFSHVPSMKG APSDFVLPIR DVRASIGAGF IYPLVGTMST MPGLPTRPCF
701: YEIDIDTTTG KVMGLS

Best Arabidopsis Sequence Match ( AT1G50480.1 )
(BLAST)

001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS

Arabidopsis Description

THFSFormate--tetrahydrofolate ligase [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.