CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93013	Soybean	nucleus	97.64	97.64
VIT_06s0004g01160.t01	Wine grape	cytosol	89.47	89.33
Solyc01g006280.2.1	Tomato	extracellular, nucleus	87.89	88.17
PGSC0003DMT400081881	Potato	cytosol	87.42	87.7
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	80.97	86.85
OQU89595	Sorghum	cytosol	86.16	86.3
CDY37133	Canola	cytosol	85.69	86.1
Bra018851.1-P	Field mustard	cytosol	85.69	86.1
CDY22798	Canola	cytosol	85.53	85.94
Bra030488.1-P	Field mustard	cytosol	85.22	85.76
CDY29587	Canola	cytosol	84.75	85.28
CDY62106	Canola	cytosol	53.62	84.83
KRH33286	Soybean	nucleus	47.33	77.98
Os09t0446800-01	Rice	plastid	85.85	77.23
TraesCS5A01G232800.1	Wheat	nucleus	85.69	76.76
TraesCS5B01G231100.1	Wheat	plastid	85.69	76.12
TraesCS5D01G235400.2	Wheat	plastid	84.91	75.52
Zm00001d020669_P001	Maize	extracellular	86.01	74.62
HORVU5Hr1G058370.1	Barley	cytosol	44.03	74.47
CDY62107	Canola	plastid	27.52	72.02
AT2G12280.1	Thale cress	plastid	9.75	68.89
AT2G12200.1	Thale cress	mitochondrion, plastid	6.6	66.67

Protein Annotations

KEGG:00670+6.3.4.3	KEGG:00720+6.3.4.3	Gene3D:1.10.8.770	EntrezGene:100782213	Gene3D:3.10.410.10	MapMan:7.5.7.1
EMBL:ACUP02006723	ncoils:Coil	InterPro:Formate_THF_ligase	InterPro:Formate_THF_ligase_CS	EnsemblPlantsGene:GLYMA_10G293800	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004329	GO:GO:0004477	GO:GO:0004488	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009113	GO:GO:0009257	GO:GO:0009987
GO:GO:0016787	GO:GO:0055114	UniProt:I1LFG6	EnsemblPlants:KRH36263	ProteinID:KRH36263	ProteinID:KRH36263.1
HAMAP:MF_01543	InterPro:P-loop_NTPase	PFAM:PF01268	ScanProsite:PS00721	ScanProsite:PS00722	PANTHER:PTHR43274
MetaCyc:PWY-1722	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3841	SUPFAM:SSF52540	UniParc:UPI000233D69C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:51116735..51120727

Molecular Weight (calculated)

67628.8 Da

IEP (calculated)

7.550

GRAVY (calculated)

0.023

Length

636 amino acids

Sequence
(BLAST)

001: MNSSTTVRKL QVVSPVPADI DIANSVEPVH ISQIAKELNL SPNHYDLYGK YKAKVLLSVL DELQGSEDGY YVVVGGITPT PLGEGKSTTT VGLCQALGAF
101: LDKKVVTCLR QPSQGPTFGI KGGAAGGGYS QVIPMDEFNL HLTGDIHAIT AANNLLAAAI DTRIFHESTQ SDKALFNRLC PPNKEGKRSF SDVMFRRLKK
201: LGISKINPDD LTPDEVNKFA RLDIDPNSIT WRRVMDINDR FLRKITIGQG PDEKGMVRET GFDISVASEI MAVLALTTSL ADMRERLGKM VIGNSRSGDP
301: VTADDLGVGG ALTVLMKDAI HPTLMQTLEG TPVLVHAGPF ANIAHGNSSI VADKIALKLV GPGGFVVTEA GFGADIGAEK FMNIKCRYSG LTPQCAIIVA
401: TIRALKMHGG GPAVVAGKPL DHAYLTENVA LVEAGCVNMA RHISNTKSYG VNVVVAINKF STDTEAELNA VQSAALAAGA YDAVICTHHA HGGKGAVDLG
501: IAVQKACKNV TQPLKFLYPV ELSIKEKIEA IAKSYGARGV EYSEQAEKQI EMYSKQGFSG LPICMAKTQY SFSDNAAAKG APSGFVLPIR DVRASIGAGF
601: IYPLVGTMST MPGLPTRPCF YDIGLDTTTE KVIGLS

Best Arabidopsis Sequence Match ( AT1G50480.1 )
(BLAST)

001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS

Arabidopsis Description

THFSFormate--tetrahydrofolate ligase [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.