CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33286	Soybean	nucleus	72.43	45.6
CDY29587	Canola	cytosol	80.25	30.85
CDY22798	Canola	cytosol	77.78	29.86
CDY37133	Canola	cytosol	77.78	29.86
AT1G50480.1	Thale cress	cytosol	75.72	29.02
KRG93013	Soybean	nucleus	72.43	27.67
KRH36263	Soybean	cytosol, endoplasmic reticulum, nucleus	72.02	27.52
VIT_06s0004g01160.t01	Wine grape	cytosol	70.78	27.0
Solyc01g006280.2.1	Tomato	extracellular, nucleus	69.96	26.81
PGSC0003DMT400081881	Potato	cytosol	69.14	26.5
OQU89595	Sorghum	cytosol	67.9	25.98
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	58.85	24.11
Os09t0446800-01	Rice	plastid	69.55	23.9
TraesCS5D01G235400.2	Wheat	plastid	69.96	23.78
TraesCS5B01G231100.1	Wheat	plastid	69.55	23.6
TraesCS5A01G232800.1	Wheat	nucleus	68.72	23.52
HORVU5Hr1G058370.1	Barley	cytosol	35.8	23.14
Zm00001d020669_P001	Maize	extracellular	68.72	22.78
CDY62106	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00670+6.3.4.3	KEGG:00720+6.3.4.3	Gene3D:1.10.8.770	Gene3D:3.40.50.300	MapMan:50.6.3	GO:A0A078J9E8
UniProt:A0A078J9E8	EnsemblPlants:CDY62107	ProteinID:CDY62107	ProteinID:CDY62107.1	InterPro:Formate_THF_ligase	InterPro:Formate_THF_ligase_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004329	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00035965001	InterPro:P-loop_NTPase	PFAM:PF01268	ScanProsite:PS00721	PANTHER:PTHR43274	MetaCyc:PWY-1722
MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3841	SUPFAM:SSF52540	UniPathway:UPA00193	UniParc:UPI0004EEFC5A
SEG:seg	:	:	:	:	:

Description

BnaC05g51220DBnaC05g51220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9E8]

Coordinates

chrLK034100:-:25646..26453

Molecular Weight (calculated)

26401.9 Da

IEP (calculated)

9.061

GRAVY (calculated)

-0.105

Length

243 amino acids

Sequence
(BLAST)

001: MVVANRHLPF PHPPPIARPY ISPTVKTFVS LPHSTEAVIP TMTSSSRKLQ VMTPVPSDID IANSVEPLHI SEIAKDLNLS PLHYDLYGKY KAKVLLSAFD
101: ELQDREDGYY VVVGGITPTP LGEGKSTTTV GLCQALGAYL NKKVVTCLRQ PSQGPTFGIK GGAAGGGYSQ VIPMDEFNLH LTGDIHAITA SNNLLAAAID
201: ARMFHEASQS DKALFNRLCP VNKEGKRSFT DVMFRRLRKL GIS

Best Arabidopsis Sequence Match ( AT1G50480.1 )
(BLAST)

001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS

Arabidopsis Description

THFSFormate--tetrahydrofolate ligase [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.