CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29587	Canola	cytosol	97.76	62.18
CDY37133	Canola	cytosol	94.78	60.19
CDY22798	Canola	cytosol	94.53	60.03
AT1G50480.1	Thale cress	cytosol	93.53	59.31
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	85.07	57.67
PGSC0003DMT400081881	Potato	cytosol	87.56	55.52
Solyc01g006280.2.1	Tomato	extracellular, nucleus	86.82	55.05
VIT_06s0004g01160.t01	Wine grape	cytosol	87.06	54.95
OQU89595	Sorghum	cytosol	86.32	54.65
KRG93013	Soybean	nucleus	85.57	54.09
KRH36263	Soybean	cytosol, endoplasmic reticulum, nucleus	84.83	53.62
TraesCS5A01G232800.1	Wheat	nucleus	87.06	49.3
TraesCS5B01G231100.1	Wheat	plastid	86.82	48.74
Os09t0446800-01	Rice	plastid	85.57	48.66
TraesCS5D01G235400.2	Wheat	plastid	85.57	48.11
Zm00001d020669_P001	Maize	extracellular	85.07	46.66
HORVU5Hr1G058370.1	Barley	cytosol	39.55	42.29
KRH33286	Soybean	nucleus	16.17	16.84
CDY62107	Canola	plastid	0.0	0.0

Protein Annotations

KEGG:00670+6.3.4.3	KEGG:00720+6.3.4.3	Gene3D:3.10.410.10	Gene3D:3.40.50.300	MapMan:7.5.7.1	GO:A0A078J6L5
UniProt:A0A078J6L5	EnsemblPlants:CDY62106	ProteinID:CDY62106	ProteinID:CDY62106.1	InterPro:Formate_THF_ligase	InterPro:Formate_THF_ligase_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004329	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00035964001	InterPro:P-loop_NTPase	PFAM:PF01268	ScanProsite:PS00722	PANTHER:PTHR43274	MetaCyc:PWY-1722
MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3841	SUPFAM:SSF52540	UniPathway:UPA00193	UniParc:UPI0004EE0948
SEG:seg	:	:	:	:	:

Description

BnaC05g51210DBnaC05g51210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6L5]

Coordinates

chrLK034100:-:24260..25558

Molecular Weight (calculated)

42520.5 Da

IEP (calculated)

6.508

GRAVY (calculated)

0.125

Length

402 amino acids

Sequence
(BLAST)

001: MDVNDRFLRK MTVGQGSEEK GMIRETGFDI SVASEIMAVL ALTTSLDDMR ERLGTMVIGN SRAGEPITAD DLGVGGALTV LMKDAIHPTL MQTLEGTPVL
101: VHAGPFANIA HGNSSIVADK IALKLVGPGG FVVTEAGFGS DIGTEKFMNI KCRYSGLRPQ CAVVVATVRA LKMHGGGPGV VAGRPLDHAY VSENVSLVEA
201: GCVNLAKHIS NIKAYGVNVV VAVNVFSTDT EAELNAVRKF SMDAGAFDAV ICSHHAHGGK GAVDLGIAVE RACQNITQPL KFLYPLDISI KEKIEAIAKS
301: YGASGVEYSD QAEKQIEMYT QQGFSNLPIC MSKTQYSFSH DASKKGAPSG FVLPVRDVRG SIGAGFIYPL VGTMSTMPGL PTRPCFYEID IDTVTGKVVG
401: LS

Best Arabidopsis Sequence Match ( AT1G50480.1 )
(BLAST)

001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS

Arabidopsis Description

THFSFormate--tetrahydrofolate ligase [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.