Factsheet for VIT_06s0004g01160.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93013	Soybean	nucleus	89.95	90.09
KRH36263	Soybean	cytosol, endoplasmic reticulum, nucleus	89.33	89.47
Solyc01g006280.2.1	Tomato	extracellular, nucleus	88.54	88.96
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	82.73	88.87
PGSC0003DMT400081881	Potato	cytosol	88.38	88.8
CDY22798	Canola	cytosol	87.76	88.31
CDY37133	Canola	cytosol	87.76	88.31
Bra018851.1-P	Field mustard	cytosol	87.76	88.31
CDY62106	Canola	cytosol	54.95	87.06
OQU89595	Sorghum	cytosol	86.66	86.93
Bra030488.1-P	Field mustard	cytosol	86.03	86.71
CDY29587	Canola	cytosol	85.71	86.39
TraesCS5A01G232800.1	Wheat	nucleus	86.66	77.75
Os09t0446800-01	Rice	plastid	86.19	77.65
TraesCS5B01G231100.1	Wheat	plastid	86.81	77.23
HORVU5Hr1G058370.1	Barley	cytosol	45.21	76.6
TraesCS5D01G235400.2	Wheat	plastid	85.56	76.22
Zm00001d020669_P001	Maize	extracellular	86.5	75.17
KRH33286	Soybean	nucleus	43.96	72.54
AT2G12280.1	Thale cress	plastid	10.2	72.22
CDY62107	Canola	plastid	27.0	70.78
AT2G12200.1	Thale cress	mitochondrion, plastid	6.75	68.25

Protein Annotations

KEGG:00670+6.3.4.3	KEGG:00720+6.3.4.3	Gene3D:1.10.8.770	EntrezGene:100255218	wikigene:100255218	Gene3D:3.10.410.10
MapMan:7.5.7.1	ProteinID:CCB43775	ProteinID:CCB43775.1	UniProt:F6GUF4	EMBL:FN594951	InterPro:Formate_THF_ligase
InterPro:Formate_THF_ligase_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004329	GO:GO:0004477
GO:GO:0004488	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009113
GO:GO:0009257	GO:GO:0009987	GO:GO:0016787	GO:GO:0055114	EntrezGene:LOC100255218	wikigene:LOC100255218
HAMAP:MF_01543	InterPro:P-loop_NTPase	PFAM:PF01268	ScanProsite:PS00721	ScanProsite:PS00722	PANTHER:PTHR43274
SUPFAM:SSF52540	TIGR:TC61371	UniParc:UPI000198374A	ArrayExpress:VIT_06s0004g01160	EnsemblPlantsGene:VIT_06s0004g01160	EnsemblPlants:VIT_06s0004g01160.t01
unigene:Vvi.714	RefSeq:XP_002285654	RefSeq:XP_002285654.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:1249200..1254061

Molecular Weight (calculated)

67983.2 Da

IEP (calculated)

7.551

GRAVY (calculated)

0.030

Length

637 amino acids

Sequence
(BLAST)

001: MSTSSKTHRK LNVLSPVPAD IDIANSVVPF HISEIAQELN LDPSHYDLYG KYKAKVLLSV LDDLQGSGDG YYVVVGGITP TPLGEGKSTT TVGLCQALGA
101: FLDKKVVTCL RQPSQGPTFG IKGGAAGGGY SQVIPMDEFN LHLTGDIHAI TAANNLLAAA IDTRIFHEAS QSDKALFNRL CPPNKEGKRS FSSIMFRRLN
201: KLGISKTKPE DLTPEEVKKF ARLDIDPDSI TWRRVMDVND RFLRKITIGQ GPEEKGMVRE TGFDISVASE IMAVLALTTS LADMRERLGK MVIGNSKAGE
301: PITADDLGVG GALTVLMKDA INPTLMQTLE GTPVLVHAGP FANIAHGNSS VVADKIALKL VGPGGFVVTE AGFGADIGTE KFMNIKCRYS GLTPQCAVIV
401: ATIRALKMHG GGPEVVAGKP LDRAYLTENV ALVEAGCVNL ARHISNTRAY GVNVVVAVNM FSTDSEAELN AVKNAALFAG AYDAVVCTHH AHGGRGAVDL
501: GIAVQRACET VAQPLKFLYP LDISIKEKIE AIAKSYGASG VEYSEQAEKQ IEMYSRQGFS NLPICMAKTQ YSFSHTASVK GAPTGFVLPI RDVRASIGAR
601: FIYPLVGTMS TMPGLPTRPC FYEIDLDTTT GKVIGLS

Best Arabidopsis Sequence Match ( AT1G50480.1 )
(BLAST)

001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS

Arabidopsis Description

THFSFormate--tetrahydrofolate ligase [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.