CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018851.1-P	Field mustard	cytosol	99.84	99.84
CDY22798	Canola	cytosol	99.53	99.53
AT1G50480.1	Thale cress	cytosol	95.73	95.58
CDY62106	Canola	cytosol	60.19	94.78
CDY29587	Canola	cytosol	94.0	94.15
VIT_06s0004g01160.t01	Wine grape	cytosol	88.31	87.76
Solyc01g006280.2.1	Tomato	extracellular, nucleus	87.2	87.07
PGSC0003DMT400081881	Potato	cytosol	87.05	86.91
KRG93013	Soybean	nucleus	87.2	86.79
KRH36263	Soybean	cytosol, endoplasmic reticulum, nucleus	86.1	85.69
OQU89595	Sorghum	cytosol	85.94	85.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	79.78	85.16
CDY62107	Canola	plastid	29.86	77.78
Os09t0446800-01	Rice	plastid	85.62	76.66
TraesCS5A01G232800.1	Wheat	nucleus	85.94	76.62
TraesCS5B01G231100.1	Wheat	plastid	85.78	75.84
TraesCS5D01G235400.2	Wheat	plastid	84.99	75.24
HORVU5Hr1G058370.1	Barley	cytosol	44.23	74.47
Zm00001d020669_P001	Maize	extracellular	85.62	73.94
KRH33286	Soybean	nucleus	42.81	70.21

Protein Annotations

KEGG:00670+6.3.4.3	KEGG:00720+6.3.4.3	Gene3D:1.10.8.770	Gene3D:3.10.410.10	MapMan:7.5.7.1	GO:A0A078HJV7
UniProt:A0A078HJV7	EnsemblPlants:CDY37133	ProteinID:CDY37133	ProteinID:CDY37133.1	InterPro:Formate_THF_ligase	InterPro:Formate_THF_ligase_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004329	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00063367001	HAMAP:MF_01543	InterPro:P-loop_NTPase	PFAM:PF01268	ScanProsite:PS00721	ScanProsite:PS00722
PANTHER:PTHR43274	MetaCyc:PWY-1722	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3841	SUPFAM:SSF52540
UniPathway:UPA00193	UniParc:UPI0004EB3FC3	SEG:seg	:	:	:

Description

BnaC06g03660DBnaC06g03660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJV7]

Coordinates

chrLK032392:-:211129..214344

Molecular Weight (calculated)

67781.9 Da

IEP (calculated)

7.012

GRAVY (calculated)

-0.014

Length

633 amino acids

Sequence
(BLAST)

001: MSSSRKLQVV SPVPADIDIA NSVEPLHIAE IAKDLNLSPL HYDLYGKYKA KVLLSAFDEL KDREDGYYVV VGGITPTPLG EGKSTTTVGL CQALGAYLDK
101: KVVTCLRQPS QGPTFGIKGG AAGGGYSQVI PMDEFNLHLT GDIHAITASN NLLAAAIDTR IFHEASQSDK ALFNRLCPVN KEGKRSFSDI MFRRLTKLGI
201: SKTIPEELTP EEVKKFARLD IDPDSITWRR VMDVNDRFLR KITVGQGPEE KGMTRETGFD ISVASEIMAV LALTTSLGDM RERLGKMVIG NSKAGEPITA
301: DDLGVGGALT VLMKDAIHPT LMQTLEGTPV LVHAGPFANI AHGNSSIVAD KIALKLVGPG GFVVTEAGFG SDIGTEKFMN IKCRYSGLTP QCAIVVATVR
401: ALKMHGGGPD VVAGRPLDRA YVSENVSLVE AGCVNLAKHI ANTKAYGVNV VVAVNMFSTD SEAELNAVRK FSMDAGAFDA VICSHHAHGG KGAVDLGIAV
501: EKACQNITQP LRFLYPLEIS IKDKIEAIAK SYGASGVEYS DQAEKQIEMY TQQGFSNLPI CMSKTQYSFS HDASKKGAPT GFVLPIRDVR GSIGAGFIYP
601: LVGTMSTMPG LPTRPCFYEI DIDTVTGKVR GLS

Best Arabidopsis Sequence Match ( AT1G50480.1 )
(BLAST)

001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS

Arabidopsis Description

THFSFormate--tetrahydrofolate ligase [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.