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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra018851.1-P Field mustard cytosol 95.74 95.89
CDY37133 Canola cytosol 95.58 95.73
CDY22798 Canola cytosol 95.11 95.26
CDY62106 Canola cytosol 59.31 93.53
Bra030488.1-P Field mustard cytosol 92.27 92.56
CDY29587 Canola cytosol 91.96 92.25
GSMUA_Achr10P... Banana cytosol, mitochondrion, plastid 80.28 85.83
OQU89595 Sorghum cytosol 85.49 85.35
AT2G12280.1 Thale cress plastid 11.67 82.22
AT2G12200.1 Thale cress mitochondrion, plastid 8.04 80.95
TraesCS5A01G232800.1 Wheat nucleus 85.96 76.76
Os09t0446800-01 Rice plastid 85.33 76.52
TraesCS5B01G231100.1 Wheat plastid 85.96 76.12
CDY62107 Canola plastid 29.02 75.72
TraesCS5D01G235400.2 Wheat plastid 85.02 75.38
Zm00001d020669_P001 Maize extracellular 84.86 73.4
Protein Annotations
KEGG:00670+6.3.4.3KEGG:00720+6.3.4.3Gene3D:1.10.8.770Gene3D:3.10.410.10MapMan:7.5.7.1EntrezGene:841470
ProteinID:AAF87882.1ProteinID:AAG51185.1ProteinID:AEE32555.1EMBL:AF162279ArrayExpress:AT1G50480EnsemblPlantsGene:AT1G50480
RefSeq:AT1G50480TAIR:AT1G50480RefSeq:AT1G50480-TAIR-GEnsemblPlants:AT1G50480.1TAIR:AT1G50480.1EMBL:AY054637
EMBL:AY081549Unigene:At.21610InterPro:Formate_THF_ligaseInterPro:Formate_THF_ligase_CSGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004329GO:GO:0004477GO:GO:0004488GO:GO:0005488GO:GO:0005507
GO:GO:0005524GO:GO:0005575GO:GO:0005576GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0005886GO:GO:0006139GO:GO:0006730GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009113GO:GO:0009257GO:GO:0009507GO:GO:0009536GO:GO:0009719
GO:GO:0009735GO:GO:0009987GO:GO:0016020GO:GO:0016787GO:GO:0016874GO:GO:0035999
GO:GO:0046686GO:GO:0048046GO:GO:0055114HAMAP:MF_01543RefSeq:NP_564571.1InterPro:P-loop_NTPase
PFAM:PF01268PO:PO:0000005PO:PO:0000293PO:PO:0007131PO:PO:0009005PO:PO:0009010
PO:PO:0009025PO:PO:0020030ScanProsite:PS00721ScanProsite:PS00722PANTHER:PTHR43274UniProt:Q9SPK5
SUPFAM:SSF52540Symbol:THFSUniParc:UPI00000ACB24SEG:seg::
Description
THFSFormate--tetrahydrofolate ligase [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK5]
Coordinates
chr1:+:18701882..18704938
Molecular Weight (calculated)
67805.7 Da
IEP (calculated)
6.699
GRAVY (calculated)
-0.040
Length
634 amino acids
Sequence
(BLAST)
001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.