Factsheet for GSMUA_Achr10P29540_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62106	Canola	cytosol	57.67	85.07
VIT_06s0004g01160.t01	Wine grape	cytosol	88.87	82.73
OQU89595	Sorghum	cytosol	88.36	82.52
KRG93013	Soybean	nucleus	87.69	81.76
Solyc01g006280.2.1	Tomato	extracellular, nucleus	86.68	81.07
KRH36263	Soybean	cytosol, endoplasmic reticulum, nucleus	86.85	80.97
PGSC0003DMT400081881	Potato	cytosol	86.17	80.6
AT1G50480.1	Thale cress	cytosol	85.83	80.28
Bra018851.1-P	Field mustard	cytosol	85.16	79.78
CDY22798	Canola	cytosol	85.16	79.78
CDY37133	Canola	cytosol	85.16	79.78
Bra030488.1-P	Field mustard	cytosol	83.98	78.8
CDY29587	Canola	cytosol	83.98	78.8
Os09t0446800-01	Rice	plastid	88.87	74.54
TraesCS5A01G232800.1	Wheat	nucleus	88.53	73.94
TraesCS5B01G231100.1	Wheat	plastid	88.03	72.91
HORVU5Hr1G066960.2	Barley	plastid	88.53	72.82
TraesCS5D01G235400.2	Wheat	plastid	87.35	72.45
AT2G12280.1	Thale cress	plastid	10.96	72.22
Zm00001d020669_P001	Maize	extracellular	88.53	71.62
AT2G12200.1	Thale cress	mitochondrion, plastid	7.42	69.84
KRH33286	Soybean	nucleus	39.8	61.14
CDY62107	Canola	plastid	24.11	58.85

Protein Annotations

KEGG:00670+6.3.4.3	KEGG:00720+6.3.4.3	Gene3D:3.10.410.10	Gene3D:3.30.1510.10	Gene3D:3.40.50.300	MapMan:7.5.7.1
InterPro:Formate_THF_ligase	InterPro:Formate_THF_ligase_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004329
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr10G29540_001	EnsemblPlants:GSMUA_Achr10P29540_001	EnsemblPlants:GSMUA_Achr10T29540_001	UniProt:M0RMH8
HAMAP:MF_01543	InterPro:P-loop_NTPase	PFAM:PF01268	ScanProsite:PS00721	ScanProsite:PS00722	PANTHER:PTHR43274
SUPFAM:SSF52540	UniParc:UPI000295839A	SEG:seg	:	:	:

Description

Formate--tetrahydrofolate ligase [Source:GMGC_GENE;Acc:GSMUA_Achr10G29540_001]

Coordinates

chr10:-:32034392..32041905

Molecular Weight (calculated)

62607.7 Da

IEP (calculated)

6.511

GRAVY (calculated)

0.126

Length

593 amino acids

Sequence
(BLAST)

001: MSPSKTIRRL EVVSPVPADI DIANSVDPFP IAAIAEDLNL GSKHYDLYGK YKAKVLLSVL DDLQGSEDGY YVVVGGISPT PLGEGKSTTT VGLCQALGAF
101: LDKKVVTCLR QPSQGPTFGI KGGAAGGGYS QVIPMDEFNL HLTGDIHAIT AANNLLAAAI DTRIFHEASQ SDKALFVRLD IDPDSITWRR VMDVNDRFLR
201: KITVGQGPEE KGMIRDTGFD IAVASEIMAV LALTTSLAEM RERLGRMVIG NSNAGEPITA DDLGVGGALT VLMKDAINPT LMQTLEGTPV LVHAGPFANI
301: AHGNSSIVAD KIALKLVGKG GFVVTEAGFG SDIGTEKFMN IKCRYSGLVP QCAIIVATIR ALKMHGGGPE VVAGKPLDRA YITENVALVE AGCVNLSRHI
401: SNTKAYGVNV VVAINKFATD TDAEMNAVRT AALAAGAFDA VVCTHHAHGG KGAVDLGTAV QRACESQSQT LNFLYPLDIG IKEKIEAIAK SYGASGVEYS
501: EQAEKQIKMY SKQGFSGLPI CMAKTQYSFS HIPSQKGAPS GFVLPIRDVR ASIGAGFIYP LVGTMSTMPG LPTRPCFFDI DIDIATGKVL GLS

Best Arabidopsis Sequence Match ( AT1G50480.1 )
(BLAST)

001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS

Arabidopsis Description

THFSFormate--tetrahydrofolate ligase [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.