Factsheet for PGSC0003DMT400081881

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006280.2.1	Tomato	extracellular, nucleus	99.05	99.05
VIT_06s0004g01160.t01	Wine grape	cytosol	88.8	88.38
KRG93013	Soybean	nucleus	88.33	88.05
CDY62106	Canola	cytosol	55.52	87.56
KRH36263	Soybean	cytosol, endoplasmic reticulum, nucleus	87.7	87.42
Bra018851.1-P	Field mustard	cytosol	86.91	87.05
CDY37133	Canola	cytosol	86.91	87.05
CDY22798	Canola	cytosol	86.75	86.89
Bra030488.1-P	Field mustard	cytosol	86.12	86.39
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	80.6	86.17
CDY29587	Canola	cytosol	85.8	86.08
OQU89595	Sorghum	cytosol	83.91	83.78
AT2G12280.1	Thale cress	plastid	10.88	76.67
TraesCS5A01G232800.1	Wheat	nucleus	85.02	75.92
Os09t0446800-01	Rice	plastid	84.54	75.81
HORVU5Hr1G058370.1	Barley	cytosol	44.64	75.27
TraesCS5B01G231100.1	Wheat	plastid	84.86	75.14
TraesCS5D01G235400.2	Wheat	plastid	84.23	74.69
Zm00001d020669_P001	Maize	extracellular	83.75	72.44
AT2G12200.1	Thale cress	mitochondrion, plastid	7.1	71.43
KRH33286	Soybean	nucleus	43.06	70.73
CDY62107	Canola	plastid	26.5	69.14

Protein Annotations

KEGG:00670+6.3.4.3	KEGG:00720+6.3.4.3	Gene3D:1.10.8.770	EntrezGene:102587729	Gene3D:3.10.410.10	MapMan:7.5.7.1
InterPro:Formate_THF_ligase	InterPro:Formate_THF_ligase_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004329
GO:GO:0005488	GO:GO:0005524	UniProt:M1D576	HAMAP:MF_01543	InterPro:P-loop_NTPase	PFAM:PF01268
EnsemblPlantsGene:PGSC0003DMG400032146	PGSC:PGSC0003DMG400032146	EnsemblPlants:PGSC0003DMT400081881	ScanProsite:PS00721	ScanProsite:PS00722	PANTHER:PTHR43274
SUPFAM:SSF52540	UniParc:UPI000296DF98	RefSeq:XP_006354188.1	SEG:seg	:	:

Description

10-formyltetrahydrofolate synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400032146]

Coordinates

chr1:+:1742874..1749507

Molecular Weight (calculated)

67303.3 Da

IEP (calculated)

6.971

GRAVY (calculated)

0.001

Length

634 amino acids

Sequence
(BLAST)

001: MGKTTRKLEV VSPVPADIDI ANSVQPLHIS EIAQELSLSS QHYDLYGKYK AKVLLSVLDE IGGSEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAFLD
101: KKVVTCVRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAA NNLLAAAIDT RIFHESTQSD KALFNRLCPP NKEGKRKFCD IMFRRLKKLG
201: IDKTAPEDLT PEESSKFARL DIDPASVTWR RVMDVNDRFL RKITIGQGPE EKGMVRETAF DISVASEIMA VLALTTSLAD MRERLGKMVV GNSKAGDPVT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLK PQCAVIVATV
401: RALKMHGGGP QVTAGRPLDK AYVTENLGLV EAGCVNLARH ISNTKAYGVN VVVAVNAFST DTEAELNAVK NAALAAGAFD SVICTHHAHG GKGAVDLGIA
501: VQKACENATQ SLKFLYPLDI GIKDKIEAIA KSYGADGVEY SEEAEKQIEM YTKQGFTNLP ICMAKTQYSF SHDAGKKGAP SGFILPIRDV RASIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTSTGKV IGLS

Best Arabidopsis Sequence Match ( AT1G50480.1 )
(BLAST)

001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS

Arabidopsis Description

THFSFormate--tetrahydrofolate ligase [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.