Factsheet for Solyc01g006280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081881	Potato	cytosol	99.05	99.05
VIT_06s0004g01160.t01	Wine grape	cytosol	88.96	88.54
KRG93013	Soybean	nucleus	88.49	88.21
KRH36263	Soybean	cytosol, endoplasmic reticulum, nucleus	88.17	87.89
Bra018851.1-P	Field mustard	cytosol	87.07	87.2
CDY37133	Canola	cytosol	87.07	87.2
CDY22798	Canola	cytosol	86.91	87.05
CDY62106	Canola	cytosol	55.05	86.82
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	81.07	86.68
Bra030488.1-P	Field mustard	cytosol	85.96	86.23
CDY29587	Canola	cytosol	85.65	85.92
OQU89595	Sorghum	cytosol	84.23	84.09
AT2G12280.1	Thale cress	plastid	10.88	76.67
TraesCS5A01G232800.1	Wheat	nucleus	85.49	76.34
Os09t0446800-01	Rice	plastid	84.86	76.1
TraesCS5B01G231100.1	Wheat	plastid	85.33	75.56
TraesCS5D01G235400.2	Wheat	plastid	84.7	75.1
HORVU5Hr1G058370.1	Barley	cytosol	44.48	75.0
Zm00001d020669_P001	Maize	extracellular	84.23	72.85
AT2G12200.1	Thale cress	mitochondrion, plastid	7.1	71.43
KRH33286	Soybean	nucleus	43.38	71.24
CDY62107	Canola	plastid	26.81	69.96

Protein Annotations

KEGG:00670+6.3.4.3	KEGG:00720+6.3.4.3	Gene3D:1.10.8.770	Gene3D:3.10.410.10	MapMan:7.5.7.1	InterPro:Formate_THF_ligase
InterPro:Formate_THF_ligase_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004329	GO:GO:0004477
GO:GO:0004488	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009113
GO:GO:0009257	GO:GO:0009987	GO:GO:0016787	GO:GO:0055114	UniProt:K4ASJ4	HAMAP:MF_01543
InterPro:P-loop_NTPase	PFAM:PF01268	ScanProsite:PS00721	ScanProsite:PS00722	PANTHER:PTHR43274	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc01g006280.2	EnsemblPlants:Solyc01g006280.2.1	UniParc:UPI00027620B5	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:874303..880944

Molecular Weight (calculated)

67330.3 Da

IEP (calculated)

6.971

GRAVY (calculated)

-0.007

Length

634 amino acids

Sequence
(BLAST)

001: MGKTTRKLEV VSPVPADIDI ANSVEPLHIS EIAQELNLSS QHYDLYGKYK AKVLLSVLDE VGGSEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAFLD
101: KKVVTCVRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAA NNLLAAAIDT RIFHESTQSD KALFNRLCPP NKEGKRKFCD IMFRRLKKLG
201: IDKTAPEDLT PEESSKFARL DIDPASVTWR RVMDVNDRFL RKITIGQGPE EKGMVRETAF DISVASEIMA VLALTTSLAD MRERLGKMVV GNSKAGDPVT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLK PQCAIIVATV
401: RALKMHGGGP QVTAGKPLDK AYVTENLGLV EAGCVNLARH ISNTKAYGVN VVVAVNAFST DTEAELNAVK NAALAAGAFD SVICTHHAHG GKGAVDLGIA
501: VQKACENAKQ SLKFLYPLDI GIKDKIEAIA KSYGADGVEY SEEAEKQIEM YTKQGFTNLP ICMAKTQYSF SHDAGKKGAP SGFILPIRDV RASIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTSTGKV IGLS

Best Arabidopsis Sequence Match ( AT1G50480.1 )
(BLAST)

001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS

Arabidopsis Description

THFSFormate--tetrahydrofolate ligase [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.